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AT5G09820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22274653 (2012): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 304 Blast hits to 304 proteins in 73 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW6ZeggNOG:ENOG4111JVZEMBL:CP002688EnsemblPlants:AT5G09820
EnsemblPlants:AT5G09820.1entrez:830842ExpressionAtlas:F4KFC4GeneID:830842
Gramene:AT5G09820.1hmmpanther:PTHR31906hmmpanther:PTHR31906:SF4InterPro:IPR006843
PaxDb:F4KFC4Pfam:PF04755PRIDE:F4KFC4Proteomes:UP000006548
RefSeq:NP_196544.3STRING:3702.AT5G09820.2TAIR:AT5G09820UniGene:At.32452
UniProt:F4KFC4
Coordinates (TAIR10) chr5:-:3056219..3057380
Molecular Weight (calculated) 29047.90 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.33
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSNLFQPPS MAASRGAISR RTGNVKVLVS FTSSNGKTLS FSDNSFRLRP MFIGKVTEQS SCSSPNEQQQ DEEQEQEQEE ITVSHIKEEL YEALKGINRG
101: IFGVKSDKKT EIEGLVKLLE CRNPTPEPTG ELDKIGGCWK LIYSTITVLG SKRTKLGLRD FVSLGDLLQQ IDIAQGKTVH VLKFDVRGLN LLDGEFRIVA
201: SFKISSKSSV EITYESSTIK PDQLMNIFRK NMDLLLGIFN PEGLFEISYP FLIKIQNRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)