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AT4G34040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G15530.3); Has 8873 Blast hits to 7809 proteins in 315 species: Archae - 0; Bacteria - 89; Metazoa - 2441; Fungi - 580; Plants - 3871; Viruses - 41; Other Eukaryotes - 1851 (source: NCBI BLink).
Protein Annotations
BioGrid:14832EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800
EMBL:AK229265EMBL:AL021961EMBL:AL161584EMBL:BT015366
EMBL:BT020341EMBL:CP002687EnsemblPlants:AT4G34040EnsemblPlants:AT4G34040.1
entrez:829550Gene3D:3.30.40.10GeneID:829550Genevisible:O49500
GO:GO:0008270GO:GO:0009908GO:GO:0010228GO:GO:0016567
GO:GO:0016874GO:GO:0040008GO:GO:0043161Gramene:AT4G34040.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF72HOGENOM:HOG000241085InParanoid:O49500
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT4G34040OMA:DMEPCCV
PaxDb:O49500Pfam:O49500Pfam:PF13639Pfscan:PS50089
PhylomeDB:O49500PIR:T05432PRIDE:O49500PRO:PR:O49500
PROSITE:PS50089ProteinModelPortal:O49500Proteomes:UP000006548RefSeq:NP_195130.1
SMART:SM00184SMR:O49500STRING:3702.AT4G34040.1SUPFAM:SSF57850
TAIR:AT4G34040UniGene:At.2085UniPathway:UPA00143UniProt:O49500
Coordinates (TAIR10) chr4:-:16304638..16307503
Molecular Weight (calculated) 71542.50 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.61
Length 666 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)