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AT4G24610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQJeggNOG:ENOG410Z114EMBL:CP002687EnsemblPlants:AT4G24610
EnsemblPlants:AT4G24610.1entrez:828563ExpressionAtlas:F4JQZ6GeneID:828563
Gramene:AT4G24610.1hmmpanther:PTHR31110hmmpanther:PTHR31110:SF2iPTMnet:F4JQZ6
PaxDb:F4JQZ6PRIDE:F4JQZ6ProteinModelPortal:F4JQZ6Proteomes:UP000006548
RefSeq:NP_194192.2TAIR:AT4G24610UniGene:At.32329UniProt:F4JQZ6
Coordinates (TAIR10) chr4:-:12700837..12707899
Molecular Weight (calculated) 129003.00 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.37
Length 1150 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIPNGELRLP ALKVREDRVS PSAPIPVTRT LVADTDVTSD DDMSTNSEDV SLDSSPENSR VSSAVGRSYG RNSSYYTYSE VSSSRETLVG AREQTGPRFD
0101: GDTEEDESTD SASSTQFSPP PAAGRINDGV SQVEQTHFPK TDRRATVEKE FDETFSSEEV SDIPSAPPFS GAAEESEEIK PATSSVQVSE VKTGDCVESR
0201: KTGHFTRPSA ASESSGPPDQ HPARLPTFHA SSRGPWHAVV SYDACVRLCL HAWSTGCMEA PMFLENECAL LREAFGLQQL LLQSEEELLA KRSSQAPHEG
0301: VAPKPKKNIG KMKVQVRRVK TVMDGPTGCS ISSLKPSLIK FEKIRIHFSN MSTRLFSGWR ALRKIHVRVP ANGSSLPRQS LAYVHASTQY LKQVSGLLKT
0401: GVTSLRNNST SYDIVQETYS CKLRLKSLAE DNAIMMQPGS GESHVFFPDS HGDDLIVEIL DPMGKDFGRV LVQLANISED SAEKLRWWSV FREPEHQHVG
0501: KLQLYIDYSA SFDDNSHLKC ASVAETVAYD LVLEVALKMQ RFQQRNLLLY GSWKWLLEEF ATYYGISDVY TKLRYLSYVM DVATPTSDCL HLVHDLLTPV
0601: IMKGNGKSAL SHQENRILNE IKDQIEQILK LVFENYKSLD ESSFSGMIDV VNSASGVPAP ALIPAVKLYT LLHDVLSPED QTHLCHYFQA AAKKRSRRHM
0701: GETDEFVANN SEPNFWDMSA MSAAYQKMTM ACKNVKNEIY TDIEIQNEDI LPSFLDLPNL SASIYSTDLC NRLRAFLVAC PPSGPSPTVA ELVIATADFQ
0801: RDLSSWNISP IQGGVDAKEL FHLYIMIWIQ DKRLSLLESC KLDKVKWSGV RTQHSTTPFV DEMYKRLNET IQDYQVIISR WPEYIFVLES AIADVEKATV
0901: EALEKQYADV LSPLKENLAP KKLSFKYVQK LTKRSVIPYV VPDELGILLN SMKRMLDVLR PNIEAKFKAW SSCIPDGGNA APGDRLSEVT VMLRAKFRSY
1001: LQAVVEKLVE NSKLQKTTML KKILQDSKES VGESDIRSKM NNLKEQLTNT VNHLHSVCET HVFIALSRGY WDRMGQIVLS FLENRKENRA WYKGSRVAVS
1101: ILDDTFAAQM QQLLGNSLRE QDLEPPRSIM EVRSILCKDP ADNKAKSFYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)