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AT4G05520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At4g05520
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EPS15 homology domain 2
Curator
Summary (TAIR10)
Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290).
Computational
Description (TAIR10)
EPS15 homology domain 2 (EHD2); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: plasma membrane, microsome, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase domain (InterPro:IPR001401), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: EPS15 homology domain 1 (TAIR:AT3G20290.2); Has 2647 Blast hits to 1775 proteins in 263 species: Archae - 2; Bacteria - 75; Metazoa - 1675; Fungi - 405; Plants - 219; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).
Protein Annotations
EC:3.6.5.2eggNOG:ENOG410XYGBeggNOG:KOG1954EMBL:AF147263
EMBL:AL161503EMBL:BT033036EMBL:CP002687EnsemblPlants:AT4G05520
EnsemblPlants:AT4G05520.1EnsemblPlants:AT4G05520.2entrez:825902ExpressionAtlas:B3LF48
Gene3D:1.10.238.10Gene3D:3.40.50.300GeneID:825902Genevisible:B3LF48
GO:GO:0005509GO:GO:0005525GO:GO:0005634GO:GO:0005737
GO:GO:0005886GO:GO:0006897GO:GO:0009506GO:GO:0010008
GO:GO:0016020GO:GO:0016787GO:GO:0032956GO:GO:0043231
GO:GO:0051260hmmpanther:PTHR11216hmmpanther:PTHR11216:SF76InterPro:IPR000261
InterPro:IPR002048InterPro:IPR011992InterPro:IPR022812InterPro:IPR027417
InterPro:IPR030381InterPro:IPR031692iPTMnet:B3LF48KEGG:ath:AT4G05520
KO:K12483ncoils:CoilOMA:NAYIMSHPaxDb:B3LF48
Pfam:B3LF48Pfam:PF00350Pfam:PF12763Pfam:PF16880
Pfscan:PS50031Pfscan:PS50222Pfscan:PS51718PhylomeDB:B3LF48
PIR:D85069PRIDE:B3LF48PRO:PR:B3LF48PROSITE:PS50031
PROSITE:PS50222PROSITE:PS51718ProteinModelPortal:B3LF48Proteomes:UP000006548
RefSeq:NP_567299.2RefSeq:NP_974517.1SMART:SM00027SMART:SM00054
SMR:B3LF48STRING:3702.AT4G05520.1SUPFAM:SSF47473SUPFAM:SSF52540
TAIR:AT4G05520tair10-symbols:ATEHD2tair10-symbols:EHD2UniGene:At.50324
UniProt:B3LF48
Coordinates (TAIR10) chr4:+:2804522..2807833
Molecular Weight (calculated) 61386.20 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.31
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: METSSTISIG SCLKEHQKIY KEWFNIADSD GDGRVSGNDA TKFFAMSKLS RQELKQVWAV ADSKRQGFLG LSEFITAMKL VSLAQEGHEI TSDLLKGSID
101: MKSVELPVLE GLENVVSKQK VSKTNVDVED NVVTKPQVTA KTPWFKSKSI IKPQVNVVTI VDGLKRLYTE KLKPLEVTYR FNDFASPVLT SSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLGC DYPGAHIGPE PTTDRFVVAM SGPDERTIPG NTMAVQADMP FNGLTSFGGA FLSKFECSQM PHPVLDQITL VDTPGVLSGE
301: KQRMQRSYDF TGVISWFASK CDMILLLFDP HKLDISDEFK RVITSLRGNE DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVVR VYIGSFNDKP
401: INEVAVGPIG KELFEKEQND LLADLMDVPK KACDRKINEF VKRARSAKIN AYIMSHLKKE MPAMMGKSKA QQRLMDNLEE EFGKVQREFH LPAGDFPSVE
501: HFREVLGGYN IDKFEKLKPK MIQAVDDMLG YDIPDLLKKF RNPYDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)