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AT5G01630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BRCA2-like B
Curator
Summary (TAIR10)
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.
Computational
Description (TAIR10)
BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
BioGrid:16986eggNOG:ENOG410Y06WeggNOG:KOG4751EMBL:AJ488305
EMBL:AL161946EMBL:BT004117EMBL:CP002688EnsemblPlants:AT5G01630
EnsemblPlants:AT5G01630.1entrez:831710Gene3D:2.40.50.140GeneID:831710
Genevisible:Q7Y1C4GO:GO:0000724GO:GO:0003697GO:GO:0005634
GO:GO:0005739GO:GO:0006355GO:GO:0051321Gramene:AT5G01630.1
hmmpanther:PTHR11289hmmpanther:PTHR11289:SF0HOGENOM:HOG000083050InParanoid:Q7Y1C4
IntAct:Q7Y1C4InterPro:IPR002093InterPro:IPR012340InterPro:IPR015187
InterPro:IPR015252InterPro:IPR015525iPTMnet:Q7Y1C4KEGG:ath:AT5G01630
KO:K08775OMA:EGAKVFKPANTHER:PTHR11289PaxDb:Q7Y1C4
Pfam:PF00634Pfam:PF09103Pfam:PF09169Pfam:Q7Y1C4
Pfscan:PS50138PhylomeDB:Q7Y1C4PIR:T48184PRIDE:Q7Y1C4
PRO:PR:Q7Y1C4PROSITE:PS50138ProteinModelPortal:Q7Y1C4Proteomes:UP000006548
RefSeq:NP_195783.3STRING:3702.AT5G01630.1SUPFAM:SSF50249SUPFAM:SSF81872
SUPFAM:SSF81878TAIR:AT5G01630tair10-symbols:ATBRCA2(V)tair10-symbols:BRCA2(V)
tair10-symbols:BRCA2BUniGene:At.33531UniProt:Q7Y1C4
Coordinates (TAIR10) chr5:-:235117..240911
Molecular Weight (calculated) 127262.00 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.37
Length 1155 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)