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AT3G53220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.791
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin 2 (TAIR:AT5G39950.1); Has 8343 Blast hits to 8341 proteins in 2235 species: Archae - 86; Bacteria - 4305; Metazoa - 749; Fungi - 428; Plants - 986; Viruses - 2; Other Eukaryotes - 1787 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZDDeggNOG:ENOG4111VS2EMBL:AL132958EMBL:AY086591
EMBL:BT028940EMBL:CP002686EnsemblPlants:AT3G53220EnsemblPlants:AT3G53220.1
entrez:824488Gene3D:3.40.30.10GeneID:824488Genevisible:Q8LCH9
GO:GO:0005623GO:GO:0006662GO:GO:0015035GO:GO:0045454
Gramene:AT3G53220.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF126HOGENOM:HOG000006348
InParanoid:Q8LCH9InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766
KEGG:ath:AT3G53220KO:K03671OMA:ILPAFCQPANTHER:PTHR10438
PaxDb:Q8LCH9Pfam:PF00085Pfam:Q8LCH9Pfscan:PS51352
PhylomeDB:Q8LCH9PIR:T46168PRIDE:Q8LCH9PRO:PR:Q8LCH9
PROSITE:PS51352ProteinModelPortal:Q8LCH9Proteomes:UP000006548RefSeq:NP_566982.1
SMR:Q8LCH9STRING:3702.AT3G53220.1SUPFAM:SSF52833TAIR:AT3G53220
UniGene:At.35213UniProt:Q8LCH9
Coordinates (TAIR10) chr3:+:19722032..19722615
Molecular Weight (calculated) 14414.90 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.63
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKQESEGAN LEFESKSNDN GNVKIAPNDQ SFLTILDDIK SSKSPAVINY GASWCGVCSQ ILPAFRKLSN SFSKLKFVYA DIDECPETTR HIRYTPTFQF
101: YRDGEKVDEM FGAGEQRLHD RLWLHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)