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AT2G29260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G06060.1); Has 125944 Blast hits to 125708 proteins in 3633 species: Archae - 994; Bacteria - 82126; Metazoa - 5739; Fungi - 6481; Plants - 2838; Viruses - 5; Other Eukaryotes - 27761 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29260-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AC004561EMBL:BT004138EMBL:CP002685EnsemblPlants:AT2G29260
EnsemblPlants:AT2G29260.1entrez:817475Gene3D:3.40.50.720GeneID:817475
Genevisible:Q9ZW12GO:GO:0009507GO:GO:0016491Gramene:AT2G29260.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF385InterPro:IPR002347InterPro:IPR016040
KEGG:ath:AT2G29260KO:K08081OMA:ITSKERWPANTHER:PTHR24322
PaxDb:Q9ZW12Pfam:PF00106Pfam:Q9ZW12PhylomeDB:Q9ZW12
PIR:D84694PRIDE:Q9ZW12PRINTS:PR00080PRINTS:PR00081
PRO:PR:Q9ZW12ProteinModelPortal:Q9ZW12Proteomes:UP000006548RefSeq:NP_180489.1
SMR:Q9ZW12STRING:3702.AT2G29260.1SUPFAM:SSF51735TAIR:AT2G29260
UniGene:At.38498UniProt:Q9ZW12
Coordinates (TAIR10) chr2:+:12582523..12583954
Molecular Weight (calculated) 35240.20 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.02
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLDMASHLY TNPPQNLHFI SSSSSLKPHL CLSFKRINPK HKSSSSSVFV PYASQSSIAI TSKERWSLNG MSALVTGGTR GIGRAIVEEL AGLGAEVHTC
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)