AT5G63290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Radical SAM superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25369349..25370894 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54049.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKTTISPIF SSFTGKPKCS SKLFFRAFSK VVLQDTPPSA RRNASTNLTT LHKGPPTSAY VHLPFCRKRC HYCDFPILAL GMSSSSARPS NVYEEGKEDD 101: PRITNYVNLL VREIKATRTD FDTNPNLETV FFGGGTPSLV PPKLVSLILE TLSLNFGLSP DAEISMEMDP GTFDGQKLKD LMKLGVNRVS LGVQAFQDEL 201: LKACGRAHGV SQVYEAIEFV KECGVENWSM DLISSLPHQT LEMWEESLRL AIESQPNHVS VYDLQVEQGT KFGNLYTPGQ SPLPSETQSA EFYKTASSML 301: RGAGYEHYEV SSYSRDGFKC KHNLIYWKNK PFYAFGLGSA SYVGGLRFSR PRRLKEYTNY VADLENGAAN WCGNGDVDLK DVATDILMLS FRTSKGLELK 401: EFGEAFGSEV VKSICKVYEP YVESGHIVCL DDMRSEVMID EFKTLVANDE VKIEDHVRYL RLKDPDGFLL SNELISLSFG VVAP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)