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AT5G10800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G25060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSUIeggNOG:KOG0151EMBL:AL365234EMBL:CP002688
EnsemblPlants:AT5G10800EnsemblPlants:AT5G10800.1entrez:830947Gene3D:1.25.40.90
Gene3D:3.30.70.330GeneID:830947GO:GO:0000166GO:GO:0003723
GO:GO:0006396GO:GO:0006397GO:GO:0008380Gramene:AT5G10800.1
hmmpanther:PTHR23140hmmpanther:PTHR23140:SF0InParanoid:F4KIA8InterPro:IPR000061
InterPro:IPR000504InterPro:IPR006569InterPro:IPR006903InterPro:IPR008942
InterPro:IPR012677InterPro:IPR013170iPTMnet:F4KIA8KEGG:ath:AT5G10800
KO:K12842ncoils:CoilOMA:ERRHESRPaxDb:F4KIA8
Pfam:PF00076Pfam:PF01805Pfam:PF04818Pfam:PF08312
Pfscan:PS50102Pfscan:PS50128Pfscan:PS51391PIR:T50789
PRIDE:F4KIA8PROSITE:PS50102PROSITE:PS50128PROSITE:PS51391
ProteinModelPortal:F4KIA8Proteomes:UP000006548RefSeq:NP_196641.2SMART:SM00360
SMART:SM00582SMART:SM00648SMART:SM01115SMR:F4KIA8
STRING:3702.AT5G10800.1SUPFAM:SSF109905SUPFAM:SSF48464SUPFAM:SSF54928
TAIR:AT5G10800UniGene:At.32334UniGene:At.6008UniProt:F4KIA8
Coordinates (TAIR10) chr5:-:3412898..3418382
Molecular Weight (calculated) 109191.00 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.96
Length 947 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
101: SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
201: NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
301: GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
401: IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
501: KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
601: GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
701: IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
801: EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
901: DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)