AT2G24350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G12640.1); Has 1250 Blast hits to 1230 proteins in 225 species: Archae - 0; Bacteria - 16; Metazoa - 421; Fungi - 338; Plants - 301; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10361239..10364223 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60799.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.56 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||
| Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKAVDGLTF PMSRVSESAS RLKTIISDML PRFTDDYSDD LSEYVTVLVC NGKSQRQASE DLEAFLKEQS WKFVVCLWEL LVKYFSQSNS ASGPKTDVDF 101: GSNDTLIKQG LSSRKYDDYD CKAADGTNSM NEQLISVTAP IDDIEAPVSP KVEKMKMSRQ ELIDSPCTRA RRRKKENWNS SGYSRKVLRS VIVSATQQPC 201: DRNPAKYEKS MNERSRTLKK RPYSPERELD SRFAPSGRAV SARYHDASLH QETEPHVSVW DRLGRASSEC VLDTESRTLS KFGIQTRETK VHQQHGPVFP 301: AAYSEQHSEI FQREVLAVGY RHRVPQFDKD RKPKSETITS TEPHIAYNLS RKRRYGMVSP NSGEFSYVPQ YKQAEQDFEK PSLLSHQSTK QDIFSEIKNV 401: KEKMQELELR IIQSKQLKKQ KVEERKPSPQ SGESQYQEDV SESRVIHVTN VYYAAKKEAI SMFFSSKCGA VQNVIVVTDP VTRHPKGTAF VTFATKESVG 501: KAVALSGTMF YSRPIKVRMH VIASGVVSAA PQIVTGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)