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AT2G24350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G12640.1); Has 1250 Blast hits to 1230 proteins in 225 species: Archae - 0; Bacteria - 16; Metazoa - 421; Fungi - 338; Plants - 301; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YE77eggNOG:KOG3702EMBL:AK228942EMBL:BT033027
EMBL:CP002685EnsemblPlants:AT2G24350EnsemblPlants:AT2G24350.1entrez:816971
Gene3D:1.20.1390.10Gene3D:3.30.70.330GeneID:816971GO:GO:0000166
GO:GO:0003676GO:GO:0006397Gramene:AT2G24350.1hmmpanther:PTHR24012
HOGENOM:HOG000120691InterPro:IPR000504InterPro:IPR002483InterPro:IPR012677
KEGG:ath:AT2G24350ncoils:CoilOMA:TEPHIAYPfam:PF00076
Pfscan:PS50102PhylomeDB:Q0WPW8PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_180012.2SMART:SM00360SMR:Q0WPW8STRING:3702.AT2G24350.1
SUPFAM:SSF54928TAIR:AT2G24350UniGene:At.13805UniGene:At.39171
UniProt:Q0WPW8
Coordinates (TAIR10) chr2:+:10361239..10364223
Molecular Weight (calculated) 60799.80 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.68
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKAVDGLTF PMSRVSESAS RLKTIISDML PRFTDDYSDD LSEYVTVLVC NGKSQRQASE DLEAFLKEQS WKFVVCLWEL LVKYFSQSNS ASGPKTDVDF
101: GSNDTLIKQG LSSRKYDDYD CKAADGTNSM NEQLISVTAP IDDIEAPVSP KVEKMKMSRQ ELIDSPCTRA RRRKKENWNS SGYSRKVLRS VIVSATQQPC
201: DRNPAKYEKS MNERSRTLKK RPYSPERELD SRFAPSGRAV SARYHDASLH QETEPHVSVW DRLGRASSEC VLDTESRTLS KFGIQTRETK VHQQHGPVFP
301: AAYSEQHSEI FQREVLAVGY RHRVPQFDKD RKPKSETITS TEPHIAYNLS RKRRYGMVSP NSGEFSYVPQ YKQAEQDFEK PSLLSHQSTK QDIFSEIKNV
401: KEKMQELELR IIQSKQLKKQ KVEERKPSPQ SGESQYQEDV SESRVIHVTN VYYAAKKEAI SMFFSSKCGA VQNVIVVTDP VTRHPKGTAF VTFATKESVG
501: KAVALSGTMF YSRPIKVRMH VIASGVVSAA PQIVTGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)