AT5G13690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.932 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha-N-acetylglucosaminidase family / NAGLU family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an enzyme that is predicted to act as an alpha-N-acetylglucosaminidase (NAGLU). An naglu mutant arrests early in seed development but does not appear to have male or female gametophytic defects. Transcript levels for this gene are increased during reproductive development. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CYCLOPS 1 (CYL1); FUNCTIONS IN: alpha-N-acetylglucosaminidase activity; INVOLVED IN: seed development; LOCATED IN: vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-N-acetylglucosaminidase (InterPro:IPR007781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4415808..4420159 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92693.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 806 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHSIKLVLLV LLIISFHSQT VSKHHPTIDG LLDRLDSLLP TSSVQESAAK GLLQRLLPTH SQSFELRIIS KDACGGTSCF VIENYDGPGR IGPEILIKGT 101: TGVEIASGLH WYLKYKCNAH VSWDKTGGIQ VASVPQPGHL PRIDSKRIFI RRPVPWNYYQ NVVTSSYSYV WWGWERWERE IDWMALQGIN LPLAFTGQEA 201: IWQKVFKRFN ISKEDLDDYF GGPAFLAWAR MGNLHAWGGP LSKNWLDDQL LLQKQILSRM LKFGMTPVLP SFSGNVPSAL RKIYPEANIT RLDNWNTVDG 301: DSRWCCTYLL NPSDPLFIEI GEAFIKQQTE EYGEITNIYN CDTFNENTPP TSEPEYISSL GAAVYKAMSK GNKNAVWLMQ GWLFSSDSKF WKPPQLKALL 401: HSVPFGKMIV LDLYAEVKPI WNKSAQFYGT PYIWCMLHNF GGNIEMYGAL DSISSGPVDA RVSKNSTMVG VGMCMEGIEQ NPVVYELTSE MAFRDEKVDV 501: QKWLKSYARR RYMKENHQIE AAWEILYHTV YNCTDGIADH NTDFIVKLPD WDPSSSVQDD LKQKDSYMIS TGPYETKRRV LFQDKTADLP KAHLWYSTKE 601: VIQALKLFLE AGDDLSRSLT YRYDMVDLTR QVLSKLANQV YTEAVTAFVK KDIGSLGQLS EKFLELIKDM DVLLASDDNC LLGTWLESAK KLAKNGDERK 701: QYEWNARTQV TMWYDSNDVN QSKLHDYANK FWSGLLEDYY LPRARLYFNE MLKSLRDKKI FKVEKWRREW IMMSHKWQQS SSEVYPVKAK GDALAISRHL 801: LSKYFP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)