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AT1G15215.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G15215EnsemblPlants:AT1G15215.1entrez:838088hmmpanther:PTHR33827
hmmpanther:PTHR33827:SF1Pfam:PF16719Pfscan:PS51257
Coordinates (TAIR10) chr1:+:5238238..5239741
Molecular Weight (calculated) 26600.10 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.60
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLYKELGD QSLHKDFCQT VASTFSCSVN RNGKSSITWK QVQIWFQEKL KHQSQPKSKT LPSPPLQIHD LSNPSSYASN ASNATFVGNS TFVQTRKGKA
101: SDLADLAFEA KSARDYAWYD VSSFLTYRVL RTGELEVRVR FSGFDNRHDE WVNVKTSVRE RSIPVEPSEC GRVNVGDLLL CFQEREDQAL YCDGHVLNIK
201: RGIHDHARCN CVFLVRYELD NTECMFRNRW D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)