AT1G02290.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 134 Blast hits to 134 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:450646..451977 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50462.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||
| Length | 443 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNKNQTVGLD SEDDDSDDYD IAQVNCELAL VEGQLCNIPY ELYDLPDLTG ILSVETWNSL LTEEERFFLS CFLPDMDPQT FSLTMQELLD GANLYFGNPE 101: DKFYKNLLGG LFTPKVACFK EGVMFVKRRK YYYSLKFYHE KLIRTFTEMQ RVWVQYGNKL GNYSRLLIWS GRTQTGNLKL LDLNRVPSKE MDSATCRFKT 201: PNVVKPVERN RSKSLTFPRS GSSKNSLKIK ITKEGVFRYQ GSSLVSAGHH HQTLPKGVLK LVPKSSSAIL RKPYVAPGNN LLQIHETGSK STRFAASPYL 301: GTTFEKPPYG TLGCSIPDPF LTYLETTQRS IQGTEPVFHD PTHTVPSALR VSNYSITEQN IPLKQEEYVR YHLKSPGFKP RTVDRGSETT ESKRISSSNN 401: FQREAKALRK PLGVLSEDNH AREANSDHLF SLTYKRRKVQ RIA |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)