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AT1G62830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LSD1-like 1
Curator
Summary (TAIR10)
Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Computational
Description (TAIR10)
LSD1-like 1 (LDL1); CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family protein (TAIR:AT3G10390.1); Has 6747 Blast hits to 5826 proteins in 999 species: Archae - 53; Bacteria - 2706; Metazoa - 1658; Fungi - 565; Plants - 779; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G62830-MONOMERBioGrid:27803BRENDA:1.14.11.B1EC:1.-.-.-
eggNOG:ENOG410XSNCeggNOG:KOG0029EMBL:AC007190EMBL:AK222014
EMBL:AY074561EMBL:AY143912EMBL:CP002684EnsemblPlants:AT1G62830
EnsemblPlants:AT1G62830.1entrez:842582Gene3D:1.10.10.10Gene3D:3.50.50.60
GeneID:842582Genevisible:Q8VXV7GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0016491GO:GO:0016575
GO:GO:0048364GO:GO:0051568Gramene:AT1G62830.1gramene_pathway:1.5.3.14
gramene_pathway:1.5.3.16gramene_pathway:PWY-3981-ARAgramene_pathway:PWY-6441hmmpanther:PTHR10742
hmmpanther:PTHR10742:SF246HOGENOM:HOG000029979InParanoid:Q8VXV7InterPro:IPR002937
InterPro:IPR007526InterPro:IPR009057InterPro:IPR011991InterPro:IPR023753
InterPro:IPR031138KEGG:00231+1.-.-.-KEGG:00592+1.-.-.-KEGG:00633+1.-.-.-
KEGG:00780+1.-.-.-KEGG:00860+1.-.-.-KEGG:00950+1.-.-.-KEGG:00981+1.-.-.-
KEGG:ath:AT1G62830KO:K11450OMA:GRVKTRKPANTHER:PTHR10742:SF246
PaxDb:Q8VXV7Pfam:PF01593Pfam:PF04433Pfam:Q8VXV7
Pfscan:PS50934PhylomeDB:Q8VXV7PRIDE:Q8VXV7PRO:PR:Q8VXV7
PROSITE:PS50934ProteinModelPortal:Q8VXV7Proteomes:UP000006548RefSeq:NP_176471.1
SMR:Q8VXV7STRING:3702.AT1G62830.1SUPFAM:SSF46689SUPFAM:SSF51905
SUPFAM:SSF54373TAIR:AT1G62830tair10-symbols:ATLSD1tair10-symbols:ATSWP1
tair10-symbols:LDL1tair10-symbols:LSD1tair10-symbols:SWP1UniGene:At.43711
UniGene:At.72446UniProt:Q8VXV7
Coordinates (TAIR10) chr1:-:23264638..23267172
Molecular Weight (calculated) 93317.50 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.31
Length 844 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)