AT3G46990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF740) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT5G58930.1); Has 220 Blast hits to 218 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 72; Fungi - 7; Plants - 82; Viruses - 1; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17311901..17313544 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61344.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||
| Length | 547 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANVKQTNRR RSSSSCHRHP SAKPTSGFCA SCLRERLVTI EAQSSSLAAV QTPELRRIRS YSVRNASVSV SDQPRRRSCD VRSSASSLLD LFVDDDEERV 101: DSSIRKPLVP DLKEEEEEEE EEEDYYDGED IKGFDEGKPR KIVEENKTMK EFIDLDWRNQ IKKNNGKDLK EIASVLSRRL KNFTLNKRND EKSDSRFAGI 201: VNGRHSSDVD PRLSFDGGRI SFEKPRSSWD GCLIEKSYHK LTTLSTVTED AKAKCGVEEE EVEEKEKSPG GTVQTKNYYS DSRRRRSFDR SVSIKRQGLL 301: EVDELRGISN AKVSPETVGL FHGAKLLVTE KELRDSNWYS IKNVKPESKE LVSKGKICIA AGGEGKKQDS VELKKPRKKW PKGWNIWGLI QRKNEAKNEI 401: KTEQILKLEG NAVEGSLAES LLKLRRVGKG ETNVGVSEKL LKSYSVSARK SCDGVRSGAN IVSGFEGGRS SCDGLFHGSI NSVEAGRNSC DGLVNGIEGK 501: QNHHLLQRNA NVGTCSQENL EKSMFRFYLS PVKSHKTSKS GKSRLKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)