AT4G00238.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding storekeeper protein-related transcriptional regulator | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding storekeeper protein-related transcriptional regulator; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00250.1); Has 934 Blast hits to 678 proteins in 131 species: Archae - 0; Bacteria - 25; Metazoa - 209; Fungi - 135; Plants - 261; Viruses - 3; Other Eukaryotes - 301 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:104092..105129 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38188.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLENPAID SSSEFESSSE EISSSKESKP KEAPVTVPST KTLNSPSAAV AVSDDSESEK QSFVLTRRKK KEGAAESPAV KSGKKEGAAE SPAVKSGNNE 101: GATESPAVKS GKKRASEGTT SRDMHVKRIK KEGDNKKGHA QRVWSEEDEI SLLQAMIDFK AETGTSPWDH KDRFFDIAKK SISFDVSKVQ FFDKIRSFKR 201: KYFGDRKVRS VESDHDKKCL GLAVSFWGSD GVSLETPVKK KVKDESVLVK ANSKEKNVKP LVKEDEQVVI LGEDSEWFEE SFLVPVIASL GLDEYSVKKK 301: WSKVSVETKK RIQEKMKLVD AKKCELLLAN MDVLKEVTSV LTQTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)