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AT4G00238.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00250.1); Has 934 Blast hits to 678 proteins in 131 species: Archae - 0; Bacteria - 25; Metazoa - 209; Fungi - 135; Plants - 261; Viruses - 3; Other Eukaryotes - 301 (source: NCBI BLink).
Protein Annotations
EMBL:AK118935EMBL:AY084536EMBL:BT005630EMBL:CP002687
EnsemblPlants:AT4G00238EnsemblPlants:AT4G00238.1entrez:825892GeneID:825892
GO:GO:0003677GO:GO:0005730Gramene:AT4G00238.1hmmpanther:PTHR31662
hmmpanther:PTHR31662:SF1HOGENOM:HOG000097067IntAct:Q8LG05InterPro:IPR007592
KEGG:ath:AT4G00238OMA:RSVESDHPfam:PF04504PhylomeDB:Q8LG05
Proteomes:UP000006548RefSeq:NP_567159.1STRING:3702.AT4G00238.1TAIR:AT4G00238
UniGene:At.22277UniGene:At.75581UniProt:Q8LG05
Coordinates (TAIR10) chr4:-:104092..105129
Molecular Weight (calculated) 38188.10 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.71
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLENPAID SSSEFESSSE EISSSKESKP KEAPVTVPST KTLNSPSAAV AVSDDSESEK QSFVLTRRKK KEGAAESPAV KSGKKEGAAE SPAVKSGNNE
101: GATESPAVKS GKKRASEGTT SRDMHVKRIK KEGDNKKGHA QRVWSEEDEI SLLQAMIDFK AETGTSPWDH KDRFFDIAKK SISFDVSKVQ FFDKIRSFKR
201: KYFGDRKVRS VESDHDKKCL GLAVSFWGSD GVSLETPVKK KVKDESVLVK ANSKEKNVKP LVKEDEQVVI LGEDSEWFEE SFLVPVIASL GLDEYSVKKK
301: WSKVSVETKK RIQEKMKLVD AKKCELLLAN MDVLKEVTSV LTQTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)