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AT2G46770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2301 (EMB2301); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain protein 66 (TAIR:AT3G61910.1); Has 2975 Blast hits to 2968 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2973; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INESeggNOG:ENOG410YG0PEMBL:AC005310EMBL:BT002931
EMBL:BT020413EMBL:CP002685EnsemblPlants:AT2G46770EnsemblPlants:AT2G46770.1
entrez:819290GeneID:819290Genevisible:Q84WP6GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009834
GO:GO:0010047GO:GO:0045893Gramene:AT2G46770.1hmmpanther:PTHR31989
hmmpanther:PTHR31989:SF45HOGENOM:HOG000237406InParanoid:Q84WP6InterPro:IPR003441
KEGG:ath:AT2G46770OMA:HELPSPQPaxDb:Q84WP6Pfam:PF02365
Pfam:Q84WP6Pfscan:PS51005PhylomeDB:Q84WP6PIR:T02678
PRIDE:Q84WP6PRO:PR:Q84WP6PROSITE:PS51005ProteinModelPortal:Q84WP6
Proteomes:UP000006548RefSeq:NP_182200.2SMR:Q84WP6STRING:3702.AT2G46770.1
SUPFAM:SSF101941TAIR:AT2G46770tair10-symbols:ANAC043tair10-symbols:EMB2301
tair10-symbols:NST1UniGene:At.36457UniProt:Q84WP6
Coordinates (TAIR10) chr2:-:19220917..19222822
Molecular Weight (calculated) 40782.80 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.55
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSKSMSISV NGQSQVPPGF RFHPTEEELL QYYLRKKVNS IEIDLDVIRD VDLNKLEPWD IQEMCKIGTT PQNDWYFFSH KDKKYPTGTR TNRATAAGFW
101: KATGRDKIIY SNGRRIGMRK TLVFYKGRAP HGQKSDWIMH EYRLDDNIIS PEDVTVHEVV SIIGEASQDE GWVVCRIFKK KNLHKTLNSP VGGASLSGGG
201: DTPKTTSSQI FNEDTLDQFL ELMGRSCKEE LNLDPFMKLP NLESPNSQAI NNCHVSSPDT NHNIHVSNVV DTSFVTSWAA LDRLVASQLN GPTSYSITAV
301: NESHVGHDHL ALPSVRSPYP SLNRSASYHA GLTQEYTPEM ELWNTTTSSL SSSPGPFCHV SNGSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)