AT4G17570.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : GATA transcription factor 26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of the GATA factor family of zinc finger transcription factors. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
GATA transcription factor 26 (GATA26); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 27 (TAIR:AT5G47140.1); Has 995 Blast hits to 960 proteins in 136 species: Archae - 0; Bacteria - 4; Metazoa - 15; Fungi - 203; Plants - 735; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:9784329..9786974 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 56971.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.71 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 510 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDH HRFQRMKSIS LGNKNKEIKM LKRKAIQENI IIKRPVFEFS 101: YGLKAAVIEE DASNRSSSGS AVSNSESCAQ FSSADGSPSQ SNAWDTTVPC KRRTCVGRPK SSSVEKLTKD LYNILQEQQS SCLSVSSEED LLFENEMSMV 201: SVEIGHGSVL MKNPHSFARE EESEASSLSS IENKSSISDA YSHSVKRVEI GAVRGSYYGG QTIKQEQFKR TKSQTERVHV LGSHGSPLCS IDLKDVFNFD 301: EFIEQFTEEE QKKLMNLLPQ IDSDDLPHSL RMMFESAQFK DNFSLFQQLI ADGVFDVSSS SGAKLEEIRT FKKLALTDFN KSRLVESYNL LKEREKGTGD 401: SVTTTSKSSI PNVPKNIVTI KRRYENQIQV KSESRGLMRS PKRVMKMKAS HETENNVSCF RPRSLASVFA QEGGSAVFSY EGNCSSDQDL LLLDLPSNGS 501: FPQAELLHQL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)