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AT4G17570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 26
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 26 (GATA26); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 27 (TAIR:AT5G47140.1); Has 995 Blast hits to 960 proteins in 136 species: Archae - 0; Bacteria - 4; Metazoa - 15; Fungi - 203; Plants - 735; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AL161546EMBL:AY062562
EMBL:BT020356EMBL:CP002687EMBL:Z97343EnsemblPlants:AT4G17570
EnsemblPlants:AT4G17570.1entrez:827474ExpressionAtlas:Q8W4H1Gene3D:3.30.50.10
GeneID:827474Genevisible:Q8W4H1GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0008270GO:GO:0043565hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF159HOGENOM:HOG000029160InParanoid:Q8W4H1InterPro:IPR000679
InterPro:IPR013088InterPro:IPR028020PaxDb:Q8W4H1Pfam:PF00320
Pfam:PF13919Pfam:Q8W4H1Pfscan:PS50114PhylomeDB:Q8W4H1
PIR:D71445PRIDE:Q8W4H1PRO:PR:Q8W4H1PROSITE:PS00344
PROSITE:PS50114ProteinModelPortal:Q8W4H1Proteomes:UP000006548RefSeq:NP_193491.2
scanprosite:PS00344SMART:SM00401SMR:Q8W4H1STRING:3702.AT4G17570.2
SUPFAM:SSF57716TAIR:AT4G17570tair10-symbols:GATA26UniGene:At.27302
UniProt:Q8W4H1
Coordinates (TAIR10) chr4:-:9784329..9786974
Molecular Weight (calculated) 56971.10 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.61
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDH HRFQRMKSIS LGNKNKEIKM LKRKAIQENI IIKRPVFEFS
101: YGLKAAVIEE DASNRSSSGS AVSNSESCAQ FSSADGSPSQ SNAWDTTVPC KRRTCVGRPK SSSVEKLTKD LYNILQEQQS SCLSVSSEED LLFENEMSMV
201: SVEIGHGSVL MKNPHSFARE EESEASSLSS IENKSSISDA YSHSVKRVEI GAVRGSYYGG QTIKQEQFKR TKSQTERVHV LGSHGSPLCS IDLKDVFNFD
301: EFIEQFTEEE QKKLMNLLPQ IDSDDLPHSL RMMFESAQFK DNFSLFQQLI ADGVFDVSSS SGAKLEEIRT FKKLALTDFN KSRLVESYNL LKEREKGTGD
401: SVTTTSKSSI PNVPKNIVTI KRRYENQIQV KSESRGLMRS PKRVMKMKAS HETENNVSCF RPRSLASVFA QEGGSAVFSY EGNCSSDQDL LLLDLPSNGS
501: FPQAELLHQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)