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AT4G15250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT3G21880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12488eggNOG:ENOG410IVP7eggNOG:ENOG410YKC1EMBL:AL161541
EMBL:CP002687EMBL:Z97338EnsemblPlants:AT4G15250EnsemblPlants:AT4G15250.1
entrez:827191GeneID:827191Genevisible:O23379GO:GO:0003700
GO:GO:0005634GO:GO:0006355GO:GO:0008270Gramene:AT4G15250.1
hmmpanther:PTHR31717hmmpanther:PTHR31717:SF13HOGENOM:HOG000116529InParanoid:O23379
InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT4G15250OMA:LCEGINL
PaxDb:O23379Pfam:O23379Pfam:PF00643Pfam:PF06203
Pfscan:PS50119Pfscan:PS51017PhylomeDB:O23379PIR:F71416
PRIDE:O23379PRO:PR:O23379PROSITE:PS50119PROSITE:PS51017
Proteomes:UP000006548RefSeq:NP_193260.2SMART:SM00336TAIR:AT4G15250
UniGene:At.54335UniProt:O23379
Coordinates (TAIR10) chr4:-:8709942..8711106
Molecular Weight (calculated) 36621.00 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.50
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MEARCDFCGT EKALIYCKSD SAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CSLQPTAVHC MNENVSLCQG CQWTASNCTG LGHRLQSLNP YSDCPSPSDF
101: GKIWSSTLEP SVTSLVSPFS DTLLQELDDW NGSSTSVVTQ TQNLKDYSSF FPMESNLPKV IEEECSGLDL CEGINLDDAP LNFNASNDII GCSSLDNTKC
201: YEYEDSFKEE NNIGLPSLLL PTLSGNVVPN MSLSMSNLTG ESNATDYQDC GISPGFLIGD SPWESNVEVS FNPKLRDEAK KRYKQKKSKR MFGKQIRYAS
301: RKARADTRKR VKGRFVKSGE TFEYDPSLVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)