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AT2G34440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : AGAMOUS-like 29
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 29 (AGL29); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, pollen tube, endosperm; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 91 (TAIR:AT3G66656.1); Has 6093 Blast hits to 6093 proteins in 742 species: Archae - 0; Bacteria - 2; Metazoa - 625; Fungi - 307; Plants - 5087; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB094117EMBL:AC004077
EMBL:AC004481EMBL:CP002685EMBL:DQ446598EMBL:DQ653040
EnsemblPlants:AT2G34440EnsemblPlants:AT2G34440.1entrez:818007GeneID:818007
Genevisible:O64703GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT2G34440.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF229
InParanoid:O64703InterPro:IPR002100KEGG:ath:AT2G34440ncoils:Coil
OMA:CNAELGIPaxDb:O64703Pfam:PF00319Pfscan:PS50066
PhylomeDB:O64703PIR:T02331PRIDE:O64703PRINTS:PR00404
PROSITE:PS50066ProteinModelPortal:O64703Proteomes:UP000006548RefSeq:NP_180991.1
SMART:SM00432SMR:O64703STRING:3702.AT2G34440.1SUPFAM:SSF55455
TAIR:AT2G34440tair10-symbols:AGL29UniGene:At.37804UniProt:O64703
Coordinates (TAIR10) chr2:+:14526950..14527468
Molecular Weight (calculated) 19754.50 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.92
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)