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AT3G17730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC domain containing protein 57
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 57 (NAC057); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 28 (TAIR:AT1G65910.1); Has 3040 Blast hits to 3029 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3040; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIDNeggNOG:ENOG410YAUCEMBL:AB026646EMBL:CP002686
EMBL:DQ056595EnsemblPlants:AT3G17730EnsemblPlants:AT3G17730.1entrez:821041
GeneID:821041GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT3G17730.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF8
HOGENOM:HOG000237406InterPro:IPR003441KEGG:ath:AT3G17730OMA:NGICSEL
Pfam:PF02365Pfscan:PS51005PhylomeDB:Q9LSH5PROSITE:PS51005
Proteomes:UP000006548RefSeq:NP_188400.1SMR:Q9LSH5SUPFAM:SSF101941
TAIR:AT3G17730tair10-symbols:anac057tair10-symbols:NAC057UniGene:At.53361
UniProt:Q9LSH5
Coordinates (TAIR10) chr3:+:6064379..6065813
Molecular Weight (calculated) 28249.70 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.87
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWD LAEKSFLPSR DPEWYFFGPR DRKYPNGFRT NRATRGGYWK STGKDRRVTS
101: QSRAIGMKKT LVYYKGRAPQ GIRTDWVMHE YRLDDKDCDD PSSLQDSYAL CRVFKKNGIC SELESERQLQ TGQCSFTTAS MEEINSNNNN NYNNDYETMS
201: PEVGVSSACV EEVVDDKDDS WMQFITDDAW DTSSNGAAMG HGQGVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)