AT2G48100.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Exonuclease family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:19671245..19672847 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39123.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 344 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSQLNPSKR RKISVRHRCV ACYKMFNRRE HLVEHMKISY HSLHQPRCGV CLKHCKSFES VREHLNVPDH LSKGNCKAIF TKRGCTLCLQ IFEEAFALAE 101: HKNKCHLSPP RPLGTSTQRN PSSSLAGSRL KAMALDCEMV GGGADGTIDQ CASVCLVDDD ENVIFSTHVQ PLLPVTDYRH EITGLTKEDL KDGMPLEHVR 201: ERVFSFLCGG QNDGAGRLLL VGHDLRHDMS CLKLEYPSHL LRDTAKYVPL MKTNLVSQSL KYLTKSYLGY KIQCGKHEVY EDCVSAMRLY KRMRDQEHVC 301: SGKAEGNGLN SRKQSDLEKM NAEELYQKST SEYRCWCLDR LSNP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)