AT1G79730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY FLOWERING 7 (ELF7); CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated, Paf1 (InterPro:IPR007133); Has 76068 Blast hits to 37830 proteins in 1710 species: Archae - 109; Bacteria - 10838; Metazoa - 29407; Fungi - 10155; Plants - 13778; Viruses - 2155; Other Eukaryotes - 9626 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30000743..30003969 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67341.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 589 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG 101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF 201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS 301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA 401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL 501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)