AT5G62640.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY FLOWERING 5 (ELF5); CONTAINS InterPro DOMAIN/s: WW domain binding protein 11 (InterPro:IPR019007); Has 56728 Blast hits to 34222 proteins in 1257 species: Archae - 64; Bacteria - 6447; Metazoa - 26252; Fungi - 8436; Plants - 7613; Viruses - 1668; Other Eukaryotes - 6248 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:25149584..25152351 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55999.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.34 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTTKGGKVM NPTDAYRKQI RKREIKRNKK ERQKVREVGI LKKDPEQIKD QIRKLDMSKA EGALDKARKH KKRQLEDTLK MVVKKRKEYD EKKKEQGEAT 101: TSVMFSHLPP QRRLTGEEDL KPEDSVYYHP TLNPTGAPPP GKPPMYNSSI GLAISSDGAS SSSAALSSIT ESEDSVLVNP PPLPPLPDGD NALSASLPLP 201: PLPPLPPTTG LTLPHSPFPP PPPGPPPKEQ DFVRPPLPPP PQLPQSSQPP PPGLSGSQGD GRFPESSDFT FDNRMNANIT SVPLLPPPGI PSNESESRPA 301: ESNASSFQNA NLSKMVAPPP PAPLHQQHQS TFAGAAASLT NFQPDVHPPP GMLRFPPPPP PLDMHPPHPG MFVGHLIPRP PYGPPPGPPP MMRPPLPPGP 401: PPSSFQDGQA MIRPYVPNKP SFVKSAAPTV VRRPLAQHTP ELTSMVPASV RVRRESATVT KPKPKTSIAS SLSFTPRAMA SAATVKVEPA KTSAASKPQS 501: IDDSYTAFLE DMKALGALDG |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)