AT3G17740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6068003..6072814 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 130082.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 1149 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSNTPEDGDG AQVTTGGLFP VFPTSANSIS AISNAPQWLR NASFTTDLSV INAAASTAPS SSEVEAGDDE DEEGGADGNI GLANQARVYN LVEEEGSLES 0101: DDDKVKRKRE KKKKRKSDNA SDESRSRKSD EYYSKPVKDY YLDTRPDPDN LAYGSIYRMN VPRYKLDNSQ RVPGSGSLRF YLRNRRSSML DTEIDIDSLE 0201: GRAKSDTRYW YAKHAAMERN KNFKRIRLSA ASEAVDSSFD NFIPLEEDVT VPESDEEDVL SKDSMIGASW EDEVLNKTRE FNRVTRERPH DAKAWLAFAD 0301: FQDKVSSMQS QKGVRLQTLE KKISILEKAF ELNPDSEELL LALLKAYRSR DNADVLISRW EKALMQNSAS YKLWREFLCV VQGEFSRFKV SEVRRLYSYA 0401: IQALSSACSK RHRQVDTTSE PLDSAAIQQE LVLVDMLVSL CRFEWQAGYQ ELATALLQAE VEFSIFSPSL LLTEQSKLRL FEHFWSSNGA RVGEEGAFGW 0501: LLWLEKEEEN RQKILKEESS DDNEVGGWTG WTEQVSGRNG DDIASANTGE VDVDRKGLDE EMEDENSKPE DDTEAMLKLL GIDVNTAASD EVKDTSTWVK 0601: WFEEEVSRDH SQWMPTRKAG EFSSVEGMGE GEDEEQLSSV VLYEDINGYL FSLRSKEARL SLVYQFIDFF GAHISPWTSS NSLSWSEKIS SLETFSDSML 0701: ENLRSVHECL SKSDSANCFS LGSLLGGSCD LSMRTEMMKF LRNAILLCLN VFPRNYILEE AVLVAEELFV TNMKTCEVAT MPCQALAKRL LKSDRQDLLL 0801: CGVYAQREAA SGNMKHARRV FDMALTSICG LPKELQCNTP LLCLWYAESE VANSSGSGRD TESSSRAMHI LCYLGSGLAY SPYTSQSSSM QILRARQGFR 0901: EKLKKIQSTW SHGVTDDQSA ALVCSAALFE ELTNDLPGAL EILEHMFSSV LPGRKSQSHQ LELLFNYYVR MLQRHQDDLT LSQLWKPISE GLQLYPLNPE 1001: LYRALVDICN HRMTSHKLRM MFDDYSRKNS SVVVWLFALS YELSKGGSSH RIRGLFERAL AQDTQNNSVI LWRCYIAYEI DIADNPSAAR RIYFRAINAC 1101: PWSKKLWLDG FGKLGSVLTA KEMSDLQEVM RDKELNIRTD IYEILLMQG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)