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AT3G23230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G43410.1); Has 5843 Blast hits to 5635 proteins in 250 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5822; Viruses - 4; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioGrid:7233eggNOG:ENOG410J23UeggNOG:ENOG410YQAXEMBL:AB025608
EMBL:AJ580377EMBL:CP002686EnsemblPlants:AT3G23230EnsemblPlants:AT3G23230.1
entrez:821901Gene3D:3.30.730.10GeneID:821901Genevisible:Q9LTC5
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873GO:GO:0010200Gramene:AT3G23230.1hmmpanther:PTHR31190
hmmpanther:PTHR31190:SF11HOGENOM:HOG000237624InParanoid:Q9LTC5InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT3G23230OMA:NQSQDDKPaxDb:Q9LTC5
Pfam:PF00847Pfam:Q9LTC5Pfscan:PS51032PhylomeDB:Q9LTC5
PRIDE:Q9LTC5PRINTS:PR00367PRO:PR:Q9LTC5PROSITE:PS51032
ProteinModelPortal:Q9LTC5Proteomes:UP000006548RefSeq:NP_188964.2SMART:SM00380
SMR:Q9LTC5STRING:3702.AT3G23230.1SUPFAM:SSF54171TAIR:AT3G23230
UniGene:At.37741UniProt:Q9LTC5
Coordinates (TAIR10) chr3:-:8289647..8290066
Molecular Weight (calculated) 16097.30 Da
IEP (calculated) 7.52
GRAVY (calculated) -1.13
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSNRSSNN QSQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY DRAAFNLRGH LAILNFPNEY YPRMDDYSLR PPYASSSSSS
101: SSGSTSTNVS RQNQREVFEF EYLDDKVLEE LLDSEERKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)