suba logo
AT4G14605.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1482 Blast hits to 884 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AK226653EMBL:AL161539
EMBL:CP002687EMBL:Z97336EnsemblPlants:AT4G14605EnsemblPlants:AT4G14605.1
entrez:827109GeneID:827109GO:GO:0003690GO:GO:0005739
GO:GO:0006355GO:GO:0006970GO:GO:0009651GO:GO:0009658
GO:GO:0009737Gramene:AT4G14605.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF9
InParanoid:F4JVI3InterPro:IPR003690KEGG:ath:AT4G14605KO:K15032
OMA:VHKSRYLPaxDb:F4JVI3Pfam:PF02536PhylomeDB:F4JVI3
PRIDE:F4JVI3ProteinModelPortal:F4JVI3Proteomes:UP000006548RefSeq:NP_567435.4
SMART:SM00733SMR:F4JVI3STRING:3702.AT4G14605.1TAIR:AT4G14605
UniGene:At.33263UniProt:F4JVI3
Coordinates (TAIR10) chr4:+:8378815..8380564
Molecular Weight (calculated) 55964.30 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.15
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)