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AT2G42190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57930.2); Has 1381 Blast hits to 1230 proteins in 175 species: Archae - 3; Bacteria - 25; Metazoa - 672; Fungi - 135; Plants - 127; Viruses - 30; Other Eukaryotes - 389 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J341eggNOG:ENOG410YQWHEMBL:AC002561EMBL:AY080869
EMBL:AY122991EMBL:CP002685EnsemblPlants:AT2G42190EnsemblPlants:AT2G42190.1
entrez:818819GeneID:818819Gramene:AT2G42190.1hmmpanther:PTHR34055
hmmpanther:PTHR34055:SF4KEGG:ath:AT2G42190ncoils:CoilOMA:GSRTEHA
PhylomeDB:O48526PIR:T00928Proteomes:UP000006548RefSeq:NP_565967.1
TAIR:AT2G42190UniGene:At.42742UniProt:O48526
Coordinates (TAIR10) chr2:+:17583625..17584050
Molecular Weight (calculated) 16028.20 Da
IEP (calculated) 4.75
GRAVY (calculated) -1.74
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRGRGKGKK QNASAREDRG SGDEEKIPAY RRRGRPQKPM KDDFEEEEEE DDEEMVEKME VEDEDEEIDD GSVTSKDLKE RKRKMSNGSN TDLTEEENGL
101: GSKPNTDDST RSTSIGFRQN GSRRKSKPRR AAEAVVECNG V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)