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AT3G13480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQJ9eggNOG:ENOG410ZGFDEMBL:CP002686EnsemblPlants:AT3G13480
EnsemblPlants:AT3G13480.1entrez:820550GeneID:820550Gramene:AT3G13480.1
hmmpanther:PTHR33401hmmpanther:PTHR33401:SF1InParanoid:F4JDC7KEGG:ath:AT3G13480
OMA:SCVCVILPaxDb:F4JDC7PRIDE:F4JDC7Proteomes:UP000006548
RefSeq:NP_187957.3TAIR:AT3G13480UniGene:At.49386UniProt:F4JDC7
Coordinates (TAIR10) chr3:-:4393184..4393848
Molecular Weight (calculated) 19380.60 Da
IEP (calculated) 4.14
GRAVY (calculated) -0.49
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGCFKDPTY VLMRVLLCKI QCPSFICFCK PSPHIYASGS LKLENTFPQV SSSTTVVDDR DHDDNDDDDA HVEEEEVVVD HVDGLLTEVV REEDCALEGK
101: KEEEESLSNG EILKSSLKKE VLDSADGGRK EKKKVQWVDL MGKELAEIRE FESSEEEDVR YDGDQSCVCV IL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)