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AT2G18240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Rer1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rer1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511 Blast hits to 511 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
BioGrid:1696eggNOG:COG5249eggNOG:KOG1688EMBL:AC006439
EMBL:AK118500EMBL:AK228424EMBL:BT029522EMBL:BT030063
EMBL:CP002685EnsemblPlants:AT2G18240EnsemblPlants:AT2G18240.1entrez:816339
GeneID:816339Genevisible:Q9ZPV7GO:GO:0016021hmmpanther:PTHR10743
hmmpanther:PTHR10743:SF2HOGENOM:HOG000163668InParanoid:Q9ZPV7IntAct:Q9ZPV7
InterPro:IPR004932KEGG:ath:AT2G18240OMA:VIYIYRVPANTHER:PTHR10743
PaxDb:Q9ZPV7Pfam:PF03248Pfam:Q9ZPV7PhylomeDB:Q9ZPV7
PIR:A84562PRIDE:Q9ZPV7PRO:PR:Q9ZPV7Proteomes:UP000006548
RefSeq:NP_565431.1RefSeq:NP_849974.1STRING:3702.AT2G18240.1TAIR:AT2G18240
TMHMM:TMhelixUniGene:At.20126UniProt:Q9ZPV7
Coordinates (TAIR10) chr2:+:7935466..7936464
Molecular Weight (calculated) 25731.20 Da
IEP (calculated) 8.32
GRAVY (calculated) 0.07
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDEPGSENE ADTIVASPLA KWRIEFSKSF QNYLDRSAPN IVRRWLVTLV AAVIYIYRVY SVYGYFVISY GLATYILNLL IGFLSPKVDP ELEALDPDSL
101: PVDESDEYKP FVRRLPEFKF WYAATKAFVV AFVMTFFSFL DVPVFWPILL CYWLVLYSLT MKRLIVHMFK YRYFPFDVRK PVKLLKFLVN SVLTFLRLKK
201: GDGGDDRPSS SNSSQGNEKQ D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)