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AT1G13460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.496
golgi 0.406
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2A regulatory B subunit family protein
Curator
Summary (TAIR10)
Encodes protein phosphatase 2A (PP2A) B'theta subunit. Targeted to peroxisomes.
Computational
Description (TAIR10)
Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: peroxisome, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2); Has 1181 Blast hits to 1162 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 160; Plants - 300; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioGrid:23146eggNOG:ENOG410XQJWeggNOG:KOG2085EMBL:AC011810
EMBL:AY085069EMBL:CP002684EnsemblPlants:AT1G13460EnsemblPlants:AT1G13460.1
EnsemblPlants:AT1G13460.2entrez:837906ExpressionAtlas:Q8LF36GeneID:837906
Genevisible:Q8LF36GO:GO:0000159GO:GO:0005777GO:GO:0007165
GO:GO:0008601Gramene:AT1G13460.1Gramene:AT1G13460.2hmmpanther:PTHR10257
hmmpanther:PTHR10257:SF26HOGENOM:HOG000067326InterPro:IPR002554InterPro:IPR016024
KEGG:ath:AT1G13460KO:K11584OMA:YAVYSQAPANTHER:PTHR10257
PaxDb:Q8LF36Pfam:PF01603Pfam:Q8LF36PhylomeDB:Q8LF36
PIRSF:PIRSF028043PRIDE:Q8LF36PRO:PR:Q8LF36ProteinModelPortal:Q8LF36
Proteomes:UP000006548Reactome:R-ATH-198753Reactome:R-ATH-202670RefSeq:NP_172803.1
RefSeq:NP_973816.1SMR:Q8LF36STRING:3702.AT1G13460.1SUPFAM:SSF48371
TAIR:AT1G13460UniGene:At.42029UniProt:Q0V836UniProt:Q8LF36
Coordinates (TAIR10) chr1:+:4616504..4618180
Molecular Weight (calculated) 56512.90 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.44
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MWKQILSKLP KKSSSKNHSS SSSSTSKSSD NGASKSGNSQ TQNAPPVKPS ADSGFKEGNL KGNGNGFTPY EALPGFKDVP NAEKQNLFVR KLSLCCVVFD
101: FSDPTKNVKE KDIKRQTLLE LVDYVASPNG KFSETVIQEV VRMVSVNIFR TLNPQPRENK VIDALDLEEE EPSMDPTWPH LQLVYEILLR LIASPETDTK
201: LAKKYIDQSF VSRLLDLFDS EDPRERDCLK TVLHRIYGKF MVHRPFIRKS INNIFYRFVF ETEKHNGIAE FLEILGSIIN GFALPLKDEH KVFLVRALVP
301: LHKPKSLQMY HQQLSYCITQ FVEKDCKLAD TVIRGLLKSW PVTNSSKEVM FLNELEEVLE ATQPPEFQRC MVPLFRQVAR CLNSLHFQVA ERALFLWNND
401: HIENLIMQNR KVILPIIFPA LERNTQKHWN QAVHSLTLNV QKIFNDIDAE LFKDCLAKFR EDESKEAEIG AKREATWKRL EEIGNQKQKS SL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)