AT5G12430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heat shock protein DnaJ with tetratricopeptide repeat | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT2G41520.1); Has 27844 Blast hits to 24585 proteins in 3132 species: Archae - 222; Bacteria - 9738; Metazoa - 5941; Fungi - 3019; Plants - 3250; Viruses - 11; Other Eukaryotes - 5663 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4028475..4034086 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129186.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1165 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSKFGELNPA FSGAGRSSSN NNPDASFNSA PFPRSSSGLS KPRFSKVRRQ VKSQNLKPSG TSDSLPGQSF NPFHFRGSFS GDPTPSEIGF GRSSNEGFVF 0101: GGSSHVDKLQ SDEKIGIRVM EEMERLKIES EGKASRLPED MQNLNSSFSF GVKKGSNNSV FATVELPTLL SNKLIIDSSS RSTGHVIQES MEKLNISERG 0201: TDQKQNNNVK SKVSMDYVGE KILSDDLSRK LSVGSMTTDG NHSGDSFQGS VNEKKVHDFN SSCPMNYSFV GTEPSQNLNA RNVHDVSSTV NTSDFNFVSN 0301: QDSVKTGFME FKTPNSKVNP FSSLDQKLGF NAKKDSVGAT TRARRKGGKQ PVKVQLNIGR EFAFAESAIP NGSNEAPEAY SPMDISPYEE TEVCREFSAD 0401: IPPTAPNYLF DAELVAATER MEINEGDEVN NYQAEEFNTG NCADHEDLAG DSISGAETES FKSAAEEMET SSETFATASE SEVTSRYKSD RKENDDHSLS 0501: NTDAASSSFT FSASSFSGVQ GPLSTSKRIN RKKNPIKLGQ DPYILIPNAT LPLKSSQHSP LTGVQSHFST GKPSERDPLT RLHKPINNSV MEKARIEKDV 0601: SNAAQEACEK WRLRGNNAYK IGDLSRAEES YTQGIDSVPR IETSRNCLRA LMLCYSNRAA TRMALGRMRE AIADCTMASS IDSNFLKVQV RAANCYLSLG 0701: EIEDASRYFK KCLQSGSDIC VDRKIIVEAS EGLQKAQRVS ECMHEAGRRL QLRTLTDAEK ALEILEDSLL ISTYSEKLLT MKGEALLMLE KYDAAIKLCE 0801: QTVDLAGKNS PPDSHDTPKD INFRIWQCHL MLKSSFYMGK LEEAIASLEK QEQLLSATKR EGNKTLESSI PLAATIRELL RLKAAGNEAF QSGRHTEAVE 0901: HYTAALACNV ESRPFTAVCF CNRAAAYKAL GQFSDAIADC SLAIALDQNY SKAISRRATL FEMIRDYGQA ASDMERYVNI LTKQMEEKTS GTLDRSTSMS 1001: NDIRQARIRL SELEEKSRKE NSLDMYLVLG VVPSCSASDI RKAYRKAALK HHPDKAGQSL TRNETKDERL WKEIGEEVRK DTDKLFKMIG EAYAVLSDPA 1101: KRSQYDLEEE MHNSQKRRDG SSTSGADTDN YPFHSSRRNW REGWSSRKDP STPRWFDPNR SNRYP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)