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AT5G12430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heat shock protein DnaJ with tetratricopeptide repeat
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT2G41520.1); Has 27844 Blast hits to 24585 proteins in 3132 species: Archae - 222; Bacteria - 9738; Metazoa - 5941; Fungi - 3019; Plants - 3250; Viruses - 11; Other Eukaryotes - 5663 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0550EMBL:CP002688EnsemblPlants:AT5G12430
EnsemblPlants:AT5G12430.1entrez:831118Gene3D:1.10.287.110Gene3D:1.25.40.10
GeneID:831118GO:GO:0009507Gramene:AT5G12430.1hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF187InParanoid:F4K0Y5InterPro:IPR001623InterPro:IPR011990
InterPro:IPR013026InterPro:IPR018253InterPro:IPR019734iPTMnet:F4K0Y5
KEGG:ath:AT5G12430KO:K09527ncoils:CoilOMA:FTAVCFC
PaxDb:F4K0Y5Pfam:PF00226Pfam:PF00515Pfam:PF13181
Pfam:PF13414Pfscan:PS50076Pfscan:PS50293PRIDE:F4K0Y5
PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076PROSITE:PS50293
ProteinModelPortal:F4K0Y5Proteomes:UP000006548Reactome:R-ATH-3371453RefSeq:NP_568276.2
scanprosite:PS00636SMART:SM00028SMART:SM00271SMR:F4K0Y5
STRING:3702.AT5G12430.1SUPFAM:SSF46565SUPFAM:SSF48452TAIR:AT5G12430
tair10-symbols:TPR16UniGene:At.32143UniProt:F4K0Y5
Coordinates (TAIR10) chr5:-:4028475..4034086
Molecular Weight (calculated) 129186.00 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.69
Length 1165 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSKFGELNPA FSGAGRSSSN NNPDASFNSA PFPRSSSGLS KPRFSKVRRQ VKSQNLKPSG TSDSLPGQSF NPFHFRGSFS GDPTPSEIGF GRSSNEGFVF
0101: GGSSHVDKLQ SDEKIGIRVM EEMERLKIES EGKASRLPED MQNLNSSFSF GVKKGSNNSV FATVELPTLL SNKLIIDSSS RSTGHVIQES MEKLNISERG
0201: TDQKQNNNVK SKVSMDYVGE KILSDDLSRK LSVGSMTTDG NHSGDSFQGS VNEKKVHDFN SSCPMNYSFV GTEPSQNLNA RNVHDVSSTV NTSDFNFVSN
0301: QDSVKTGFME FKTPNSKVNP FSSLDQKLGF NAKKDSVGAT TRARRKGGKQ PVKVQLNIGR EFAFAESAIP NGSNEAPEAY SPMDISPYEE TEVCREFSAD
0401: IPPTAPNYLF DAELVAATER MEINEGDEVN NYQAEEFNTG NCADHEDLAG DSISGAETES FKSAAEEMET SSETFATASE SEVTSRYKSD RKENDDHSLS
0501: NTDAASSSFT FSASSFSGVQ GPLSTSKRIN RKKNPIKLGQ DPYILIPNAT LPLKSSQHSP LTGVQSHFST GKPSERDPLT RLHKPINNSV MEKARIEKDV
0601: SNAAQEACEK WRLRGNNAYK IGDLSRAEES YTQGIDSVPR IETSRNCLRA LMLCYSNRAA TRMALGRMRE AIADCTMASS IDSNFLKVQV RAANCYLSLG
0701: EIEDASRYFK KCLQSGSDIC VDRKIIVEAS EGLQKAQRVS ECMHEAGRRL QLRTLTDAEK ALEILEDSLL ISTYSEKLLT MKGEALLMLE KYDAAIKLCE
0801: QTVDLAGKNS PPDSHDTPKD INFRIWQCHL MLKSSFYMGK LEEAIASLEK QEQLLSATKR EGNKTLESSI PLAATIRELL RLKAAGNEAF QSGRHTEAVE
0901: HYTAALACNV ESRPFTAVCF CNRAAAYKAL GQFSDAIADC SLAIALDQNY SKAISRRATL FEMIRDYGQA ASDMERYVNI LTKQMEEKTS GTLDRSTSMS
1001: NDIRQARIRL SELEEKSRKE NSLDMYLVLG VVPSCSASDI RKAYRKAALK HHPDKAGQSL TRNETKDERL WKEIGEEVRK DTDKLFKMIG EAYAVLSDPA
1101: KRSQYDLEEE MHNSQKRRDG SSTSGADTDN YPFHSSRRNW REGWSSRKDP STPRWFDPNR SNRYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)