AT4G39870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TLD-domain containing nucleolar protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TLD-domain containing nucleolar protein; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT2G05590.2); Has 2250 Blast hits to 2105 proteins in 277 species: Archae - 0; Bacteria - 56; Metazoa - 1073; Fungi - 317; Plants - 190; Viruses - 32; Other Eukaryotes - 582 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:18502234..18504275 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43876.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKHKSFRSK AVHFVTDLTA GLLNPISDKP SSAHPPPPLP DEEDESKRNQ LESTTAEQPK DLVDEPDTSS FSAFLGSLLS SDPKDKRKDQ DPEDEEDEEE 101: DEEEDSEAET SDTSSSSANP TRTMKETTSG GAAKKSFLSK YKQHFRNFYQ AVKFPGVKER KGNSDVIPDD EETEYYDGLE MKPMQNNNVK EEVTVVVQAI 201: IPEISEPSLL LSEQSRRSLY TSLPALVQGR KWILLYSTWR HGISLSTLYR KSLLWPGLSL LVVGDRKGSV FGGLVEAPLI PTDKKYQGTN STFVFTNKSG 301: QPTIYRPTGA NRFYTLCSKE FLALGGGGRF ALYLDSELLS GSSAYSETYG NSCLADSQDF DVKEVELWGF VYGSKYDEIL AHSKTMEPGL CRWS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)