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AT1G47330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 11150 Blast hits to 10836 proteins in 2494 species: Archae - 102; Bacteria - 8237; Metazoa - 428; Fungi - 268; Plants - 237; Viruses - 0; Other Eukaryotes - 1878 (source: NCBI BLink).
Protein Annotations
BioGrid:26361eggNOG:COG1253eggNOG:KOG2118EMBL:AC015449
EMBL:AY075631EMBL:AY133580EMBL:CP002684EnsemblPlants:AT1G47330
EnsemblPlants:AT1G47330.1entrez:841136GeneID:841136Genevisible:Q8RY60
GO:GO:0005886GO:GO:0016021Gramene:AT1G47330.1hmmpanther:PTHR12064
hmmpanther:PTHR12064:SF35HOGENOM:HOG000183089InParanoid:Q8RY60InterPro:IPR000644
InterPro:IPR002550iPTMnet:Q8RY60KEGG:ath:AT1G47330KO:K16302
OMA:LKVGAIMPaxDb:Q8RY60Pfam:PF01595Pfam:Q8RY60
Pfscan:PS51371PhylomeDB:Q8RY60PIR:A96514PRIDE:Q8RY60
PRO:PR:Q8RY60PROSITE:PS51371ProteinModelPortal:Q8RY60Proteomes:UP000006548
RefSeq:NP_175166.2SMR:Q8RY60STRING:3702.AT1G47330.1SUPFAM:SSF54631
TAIR:AT1G47330TMHMM:TMhelixUniGene:At.44136UniGene:At.71099
UniProt:Q8RY60
Coordinates (TAIR10) chr1:+:17351149..17353739
Molecular Weight (calculated) 57933.20 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.12
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDIPCCGT TFSLYVVIII ALVAFAGLMA GLTLGLMSLG LVDLEVLIKS GRPQDRINAG KIFPVVKNQH LLLCTLLIGN SMAMEALPIF LDKIVPPWLA
101: ILLSVTLILV FGEIMPQAVC TRYGLKVGAI MAPFVRVLLV LFFPISYPIS KVLDWMLGKG HGVLLRRAEL KTFVNFHGNE AGKGGDLTTD ETSIITGALE
201: LTEKTAKDAM TPISNAFSLE LDTPLNLETL NTIMSVGHSR VPVYFRNPTH IIGLILVKNL LAVDARKEVP LRKMSMRKIP RVSETMPLYD ILNEFQKGHS
301: HIAVVYKDLD EQEQSPETSE NGIERRKNKK TKDELFKDSC RKPKAQFEVS EKEVFKIETG DAKSGKSENG EEQQGSGKTS LLAAPAKKRH RGCSFCILDI
401: ENTPIPDFPT NEEVVGVITM EDVIEELLQE EILDETDEYV NIHNRIRVNM HASPENLPSV ITSITQSSSG STSPNQTSHM ATPDSSPTTK PSNSSPTRKP
501: SVSSPTREPS DSSHSMAPKH EESTQTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)