suba logo
AT5G06260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TLD-domain containing nucleolar protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TLD-domain containing nucleolar protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR8FeggNOG:KOG2557EMBL:AB006700EMBL:AY050830
EMBL:AY091162EMBL:CP002688EnsemblPlants:AT5G06260EnsemblPlants:AT5G06260.1
entrez:830513Gene3D:1.10.238.10GeneID:830513GO:GO:0005509
Gramene:AT5G06260.1hmmpanther:PTHR23354HOGENOM:HOG000243973InterPro:IPR002048
InterPro:IPR006571InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT5G06260
OMA:KNLQWCAPfam:PF07534Pfscan:PS50222PhylomeDB:Q9FNI2
PROSITE:PS00018PROSITE:PS50222Proteomes:UP000006548RefSeq:NP_196244.1
scanprosite:PS00018SMART:SM00584SMR:Q9FNI2SUPFAM:SSF47473
TAIR:AT5G06260UniGene:At.24045UniProt:Q9FNI2
Coordinates (TAIR10) chr5:-:1902755..1904835
Molecular Weight (calculated) 47426.50 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.38
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSNSSSVD HRFISASRAF TQKKLDDLKS LFVSLASNSQ SNDQYVSYPV FQEYFGLSGS LGERMFDMVT QRRKDDKMTY EDLVIAKATY EKGTDDEIAE
101: FIYQTLDVNG NGVLSRSDLE SFLVVILKSV FSTESSDAES SDYKKMVDAL LNAATFSKSD DGSEKGMSFE DFRSWCSFVP TIRKFLGSLL MPPSTVRPGY
201: QVPHLLYEDS VSSDRLLLKK EYAWHIGGAL PHHELVEWKL LYHSSVHGQS FNTFLGHTSN TGMSASVLII KDTEGYVYGG YASQPWERYS DFYGDMKSFL
301: FQLNPKAAIY RPTGANTNIQ WCATNFTSEN IPNGIGFGGK INHFGLFISA SFDQGQTFEC TTFGSPSLSK TSRIQPEVIE CWGIVQASNE QDTKHNAMKG
401: TVLERFKEDR NMLKLVGMAG NSND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)