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AT5G20660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.968
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zn-dependent exopeptidases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zn-dependent exopeptidases superfamily protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Zn-dependent exopeptidases superfamily protein (TAIR:AT1G67420.2); Has 1349 Blast hits to 1339 proteins in 371 species: Archae - 7; Bacteria - 487; Metazoa - 434; Fungi - 254; Plants - 72; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2234eggNOG:KOG2194EMBL:AK226584EMBL:CP002688
EnsemblPlants:AT5G20660EnsemblPlants:AT5G20660.1entrez:832189ExpressionAtlas:Q0WVZ7
GeneID:832189GO:GO:0005783GO:GO:0016021Gramene:AT5G20660.1
hmmpanther:PTHR12147hmmpanther:PTHR12147:SF6HOGENOM:HOG000005973InterPro:IPR007484
MEROPS:M28.A03OMA:AVNVVHVPfam:PF04389PhylomeDB:Q0WVZ7
Proteomes:UP000006548RefSeq:NP_197566.1STRING:3702.AT5G20660.1SUPFAM:SSF53187
TAIR:AT5G20660TMHMM:TMhelixUniGene:At.31161UniProt:Q0WVZ7
Coordinates (TAIR10) chr5:+:6986402..6990947
Molecular Weight (calculated) 100100.00 Da
IEP (calculated) 7.12
GRAVY (calculated) 0.10
Length 910 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKRHPKASD LTEPSSSSKE TDASSDKDAL DKEVQADVKR SGKVWLSVLI LITYSSWFVY NYQLGNLPKP LTAKQAGKRG FSEIEAIKHV KALTQFGPHP
101: VSSDALVHAL EYVLAEVEKV KETAHWEVDV NVDFFESKFG VNRLVGGLFK GKSLVYSDIS HIVLRILPKY ESDAGDNAIL VSSHIDTVFT TGGAGDCSSC
201: VAVMLELARS ASQSAHGFKN SIIFLFNTGE EEGLNGAHSF ITQHPWSSTV RLAIDLEAMG TGGKSSIFQA GPSPWAIENF ALAAKYPSGQ IIGQDLFTSG
301: IIKSATDFQV YKEVAGLSGL DFAFADNTAV YHTKNDKIEL IKPGSLQHLG ENMLAFLLRV ASSSDLPKDK TLQGEERSNP DSAVYFDVLG KYMIVYRQSL
401: ATMLYVSVIM QSILIWVLSV FMGGYPAVVS LILSCLSIIL SWIFSVAFSV AVAFILPWIS SSPVPFASNP WMVVGLFVSP AILGSISGQH VAFIFLRKKS
501: SNRNSNKMQV SPRLRDNLAR LEAERWLFKS GFIQWLVLLA LGTYYKLGST YLALVWLVPP AFAYGLLEAT LSPIRLPKPL KLATLLISLA VPILVSSGSF
601: IQLTGTMIGM LIRFDSNPGV TPEWLGSALI AVAIATFISL SMVYLLAYIH LSGAKKSIVT ALCIITALSL ALVSSGVLPA FTEDTARAVN VVHVVDTSGQ
701: DQVAFISLFS NTPGNLNMEA EQIKEGFRCG RENKIDFVSF EAKYNCVTKK DAEVGWDKHD IPVLRVINDK EREGGRVIAV SMDTGGSSRW TLRIDMDEIE
801: DFTMQVGEEE EEELMIERGE KSSNEEGWHQ IQFAGGKKAP TSFVLKLYKE EEVSDDKKKQ RPLLKLRTDL NRRTPQVQRV LERLPPFCTM FGKSTSPFTL
901: AFLASLPYTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)