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AT2G14720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Predictors External Curations
AmiGO : golgi 10561538
AmiGO : golgi 10871276
AmiGO : golgi 10888666
SwissProt : cytosol 16381842
SwissProt : golgi 16381842
SwissProt : vacuole 16381842
SwissProt : plasma membrane 16381842
TAIR : vacuole 15539469
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20807880 (2010): plasma membrane
  • PMID:20807880 (2010): plant-type vacuole
  • PMID:16980567 (2006): plant-type vacuole
  • PMID:15632053 (2005): Golgi
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar sorting receptor 4
Curator
Summary (TAIR10)
encodes a vacuolar sorting receptor
Computational
Description (TAIR10)
vacuolar sorting receptor 4 (VSR4); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, vacuole, Golgi transport complex; EXPRESSED IN: 9 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like (InterPro:IPR006210), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: vaculolar sorting receptor 3 (TAIR:AT2G14740.2); Has 13354 Blast hits to 5993 proteins in 249 species: Archae - 2; Bacteria - 126; Metazoa - 12130; Fungi - 11; Plants - 500; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFFKeggNOG:ENOG41105IFEMBL:AC004705EMBL:AC005398
EMBL:AK220910EMBL:AY062744EMBL:BT008390EMBL:CP002685
EnsemblPlants:AT2G14720EnsemblPlants:AT2G14720.1EnsemblPlants:AT2G14720.2entrez:815960
GeneID:815960Genevisible:Q56ZQ3GO:GO:0000139GO:GO:0005509
GO:GO:0005768GO:GO:0005773GO:GO:0005794GO:GO:0005802
GO:GO:0006623GO:GO:0016021GO:GO:0030665GO:GO:0031902
Gramene:AT2G14720.1Gramene:AT2G14720.2hmmpanther:PTHR22765hmmpanther:PTHR22765:SF54
InParanoid:Q56ZQ3InterPro:IPR001881InterPro:IPR003137InterPro:IPR013032
InterPro:IPR018097InterPro:IPR026823KEGG:ath:AT2G14720OMA:STDMETN
PaxDb:Q56ZQ3Pfam:PF02225Pfam:PF12662Pfam:Q56ZQ3
PhylomeDB:Q56ZQ3PIR:T02604PRIDE:Q56ZQ3PRO:PR:Q56ZQ3
PROSITE:PS00010PROSITE:PS01186PROSITE:PS01187ProteinModelPortal:Q56ZQ3
Proteomes:UP000006548RefSeq:NP_179079.1RefSeq:NP_849954.1scanprosite:PS01186
scanprosite:PS01187SMART:SM00179SMR:Q56ZQ3STRING:3702.AT2G14720.1
SUPFAM:SSF52025TAIR:AT2G14720tair10-symbols:BP80-2;1tair10-symbols:MTV4
tair10-symbols:VSR2;1tair10-symbols:VSR4TMHMM:TMhelixUniGene:At.22740
UniGene:At.75037UniProt:Q56ZQ3
Coordinates (TAIR10) chr2:-:6300878..6304156
Molecular Weight (calculated) 69815.80 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.40
Length 628 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)