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AT1G52420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.803
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-Glycosyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G15940.2); Has 7088 Blast hits to 7079 proteins in 1470 species: Archae - 243; Bacteria - 4881; Metazoa - 13; Fungi - 38; Plants - 140; Viruses - 0; Other Eukaryotes - 1773 (source: NCBI BLink).
Protein Annotations
CAZy:GT4eggNOG:COG0438eggNOG:KOG0853EMBL:AC008016
EMBL:AC037424EMBL:AK227148EMBL:BT002514EMBL:BT008418
EMBL:CP002684EMBL:KJ138965EnsemblPlants:AT1G52420EnsemblPlants:AT1G52420.1
entrez:841673GeneID:841673GO:GO:0016021GO:GO:0016740
Gramene:AT1G52420.1hmmpanther:PTHR12526hmmpanther:PTHR12526:SF160HOGENOM:HOG000090291
InterPro:IPR001296KEGG:ath:AT1G52420OMA:KDELYMEPfam:PF00534
Pfam:PF16994PhylomeDB:Q9SSP6PIR:E96564Proteomes:UP000006548
RefSeq:NP_175651.1SMR:Q9SSP6STRING:3702.AT1G52420.1SUPFAM:SSF53756
TAIR:AT1G52420TMHMM:TMhelixUniGene:At.43422UniProt:Q9SSP6
Coordinates (TAIR10) chr1:+:19528667..19531035
Molecular Weight (calculated) 75640.80 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.43
Length 670 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEIRLSPLR QTSVKSSLSG RSTPRGTPRV YSGRTPRRGH GGGGAFQWFR SSRLVYWLLL ITLWTYLGFY VQSRWAHDNE SKVEFLRFGG RPRKDELYME
101: KIKGLDVVAN ENSEALVNIT GKDDAGSNKR TDVSLIKKDD GVSRRSLSSK QKTRKTVRTS RSKIRVKQKV IKEVLETKDL DDEQDPQLPL TNATYGKLLG
201: PFGSLEDKVL EWSPHRRSGT CDRKSDFKRL VWSRRFVLLF HELSMTGAPI SMMELASELL SCGATVSAVV LSRRGGLMQE LSRRRIKVVE DKGELSFKTA
301: MKADLIIAGS AVCTSWIDQY MNHHPAGGSQ IAWWIMENRR EYFDRAKPVL DRVKMLIFLS ESQSRQWLTW CEEEHIKLRS QPVIVPLSVN DELAFVAGIP
401: SSLNTPTLSP EKMRVKRQIL RESVRTELGI TDSDMLVMSL SSINPTKGQL LLLESIALAL SERGQESQRN HKGIIRKEKV SLSSKHRLRG SSRQMKSVSL
501: TLDNGLRREK QELKVLLGSV GSKSNKVGYV KEMLSFLSNS GNLSKSVMWT PATTRVASLY SAADVYVTNS QGVGETFGRV TIEAMAYGLA VVGTDAGGTK
601: EMVQHNMTGL LHSMGRSGNK ELAHNLLYLL RNPDERLRLG SEGRKMVEKM YMKQHMYKRF VDVLVKCMRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)