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AT3G15940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-Glycosyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G52420.1); Has 9778 Blast hits to 9756 proteins in 1676 species: Archae - 288; Bacteria - 7022; Metazoa - 45; Fungi - 51; Plants - 181; Viruses - 0; Other Eukaryotes - 2191 (source: NCBI BLink).
Protein Annotations
CAZy:GT4eggNOG:COG0438eggNOG:KOG0853EMBL:AB026653
EMBL:AJ507211EMBL:AY091763EMBL:CP002686EMBL:KJ138823
EnsemblPlants:AT3G15940EnsemblPlants:AT3G15940.1EnsemblPlants:AT3G15940.2entrez:820838
GeneID:820838GO:GO:0005794GO:GO:0016021GO:GO:0016740
Gramene:AT3G15940.1Gramene:AT3G15940.2hmmpanther:PTHR12526hmmpanther:PTHR12526:SF160
HOGENOM:HOG000090291InterPro:IPR001296KEGG:ath:AT3G15940OMA:AWWVMEN
Pfam:PF00534Pfam:PF16994PhylomeDB:Q9LSB5Proteomes:UP000006548
RefSeq:NP_001189906.1RefSeq:NP_188215.1SMR:Q9LSB5STRING:3702.AT3G15940.1
SUPFAM:SSF53756TAIR:AT3G15940TMHMM:TMhelixUniGene:At.38967
UniProt:Q9LSB5
Coordinates (TAIR10) chr3:-:5393632..5396187
Molecular Weight (calculated) 78711.40 Da
IEP (calculated) 10.77
GRAVY (calculated) -0.41
Length 697 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDLRLSPLK LGSFKSSLSG RSTPRGSPTL RKVHSGRTPR REGKGSGGAV QWFRSNRLLY WLLLITLWTY LGFYVQSRWA HDDDNKVEFL RFGGKLREDV
101: LHVEQNKRRD LVADESSHAV VDHTNIVHLG VNKRMHVTLA KKEDSTSRRS VSPRRRTRKA SRSSRTRIRS TQKVRKVMET KELDEQDQEL PNINVTYGKL
201: FGPFGSLEDR ILEWSPQKRS GTCDRKSDFK RLVWSRRFVL LFHELSMTGA PISMMELASE LLSCGATVYA VVLSRRGGLL QELTRRRIKV VEDKGELSFK
301: TAMKADLVIA GSAVCASWID QYMDHHPAGG SQIAWWVMEN RREYFDRAKP VLDRVKLLIF LSEVQSKQWL TWCEEDHVKL RSQPVIVPLS VNDELAFVAG
401: VSSSLNTPTL TQETMKEKRQ KLRESVRTEF GLTDKDMLVM SLSSINPGKG QLLLLESVAL ALEREQTQEQ VAKRNQSKII KNLNGIRKEK ISLSARHRLR
501: GSSRKMKITS PAVDNHPSVL SATGRRKLLL SGNVTQKQDL KLLLGSVGSK SNKVAYVKEM LSFLSNNGNL SNSVLWTPAT TRVASLYSAA DVYVTNSQGV
601: GETFGRVTIE AMAYGLPVLG TDAGGTKEIV EHNVTGLLHP VGRAGNKVLA QNLLFLLRNP STRLQLGSQG REIVEKMYMK QHMYKRFVDV LVKCMRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)