AT5G57970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.858 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA glycosylase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1); Has 3809 Blast hits to 3727 proteins in 1589 species: Archae - 10; Bacteria - 3189; Metazoa - 57; Fungi - 9; Plants - 164; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23467316..23468910 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38651.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGAPRVQSM NVAEAETRST LGSTAKKASP FITHKAVSKS LRKLERSSSG RTGSDEKTSY ATPTETVSSS SQKHTLNAAS ILRRHEQNLN SNLSLNASFS 101: SDASMDSFHS RASTGRLIRS YSVGSRSKSY PSKPRSVVSE GALDSPPNGS ETKKRCTWVT PNSDPCYIVF HDEEWGVPVH DDKRLFELLV LSGALAEHTW 201: PTILSKRQAF REVFADFDPN AIVKINEKKI IGPGSPASTL LSDLKLRAVI ENARQILKVI EEYGSFDKYI WSFVKNKAIV SKFRYQRQVP AKTPKAEVIS 301: KDLVRRGFRS VGPTVVYSFM QAAGITNDHL TSCFRFHHCI FEHERYV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)