suba logo
AT1G52310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein kinase family protein / C-type lectin domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein kinase family protein / C-type lectin domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-type lectin (InterPro:IPR001304), Protein kinase, catalytic domain (InterPro:IPR000719), C-type lectin fold (InterPro:IPR016187), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), C-type lectin-like (InterPro:IPR016186); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61860.1); Has 99398 Blast hits to 98054 proteins in 3684 species: Archae - 81; Bacteria - 11858; Metazoa - 37328; Fungi - 6469; Plants - 30414; Viruses - 265; Other Eukaryotes - 12983 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G52310-MONOMEREC:2.7.10.1eggNOG:COG0515eggNOG:KOG1187
EMBL:AC037424EMBL:AK220938EMBL:AY062751EMBL:BT008903
EMBL:CP002684EnsemblPlants:AT1G52310EnsemblPlants:AT1G52310.1entrez:841661
Gene3D:2.60.120.200Gene3D:3.10.100.10GeneID:841661Genevisible:Q9C823
GO:GO:0004714GO:GO:0005524GO:GO:0005886GO:GO:0016021
GO:GO:0030246Gramene:AT1G52310.1hmmpanther:PTHR27006hmmpanther:PTHR27006:SF5
HOGENOM:HOG000237405InParanoid:Q9C823InterPro:IPR000719InterPro:IPR001245
InterPro:IPR001304InterPro:IPR008266InterPro:IPR011009InterPro:IPR013320
InterPro:IPR016186InterPro:IPR016187InterPro:IPR020635KEGG:ath:AT1G52310
OMA:TLAVVIWPaxDb:Q9C823Pfam:PF00059Pfam:PF07714
Pfam:Q9C823Pfscan:PS50011Pfscan:PS50041PhylomeDB:Q9C823
PIR:C96563PRIDE:Q9C823PRO:PR:Q9C823PROSITE:PS00109
PROSITE:PS50011PROSITE:PS50041ProteinModelPortal:Q9C823Proteomes:UP000006548
RefSeq:NP_175641.1scanprosite:PS00109SMART:SM00034SMART:SM00219
SMART:SM00220SMR:Q9C823STRING:3702.AT1G52310.1SUPFAM:SSF56112
SUPFAM:SSF56436TAIR:AT1G52310TMHMM:TMhelixUniGene:At.27244
UniGene:At.51114UniProt:Q9C823
Coordinates (TAIR10) chr1:+:19478401..19480462
Molecular Weight (calculated) 61824.60 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.17
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MELKWVSCRK QSLFLISCLA LLCLASLDTI SCESTQNATD FKKRSQTVSC PPDWIIGPNQ TKCYAYFKNS TSWEKSEMFC RTYGGHLASL ASSKELSFVQ
101: KLCNGNVSSC WIGGRSMNSS TSGFRWSWSD PKTPQWNQSM FPKVPIRTRC GNGNGSSSCR ANICIAVTNG SSSIFGERCN ASHAFVCAVD SDIKCRNCHK
201: YLVILAVVSG LILFTTFAII LWLLVYKRSK KRRKSRKVSN PASSSSVVPP SWKIFTSEEL RSMTKNFSEA NRLAGDAKTG GTYSGGLSDG TKVAVKRLKR
301: SSFQRKKEFY SEIRRAAKLY HPNVVAIKGC CYDHGERFIV YEFIASGPLD RWLHHVPRGG RSLDWNMRLN IATTLAQGIA FLHDKVKPQV VHRDIRASNV
401: LLDEEFGAHL MGVGLSKFVP WEVMQERTVM AGGTYGYLAP EYVYRNELTT KSDVYSFGVL LLEIVSGRRP TQAVNSSVGW QSIFEWATPL VQANRWLEIL
501: DPVITCGLPE ACVVQKVVDL VYSCTQNVPS MRPRMSHVVH QLQQLVQPLE VK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)