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AT3G24150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWKWeggNOG:ENOG411198HEMBL:AK228827EMBL:CP002686
EnsemblPlants:AT3G24150EnsemblPlants:AT3G24150.1entrez:822001Gene3D:1.10.246.20
GeneID:822001GO:GO:0003712GO:GO:0006355Gramene:AT3G24150.1
hmmpanther:PTHR35300hmmpanther:PTHR35300:SF2HOGENOM:HOG000090670InterPro:IPR003101
KEGG:ath:AT3G24150OMA:PFLHESMPhylomeDB:Q0WQ76Proteomes:UP000006548
RefSeq:NP_189057.1SMR:Q0WQ76STRING:3702.AT3G24150.1TAIR:AT3G24150
UniGene:At.37585UniProt:Q0WQ76
Coordinates (TAIR10) chr3:-:8724273..8725586
Molecular Weight (calculated) 38455.30 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.70
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRPGPRPYE CVKRAWHSDR HQPIRGSIIR QIFRLAMEAH SAATRKNKEW QEKLPVVVLK AEEIMYSKAN SEEEYTDADT MWNRVNDAID TIIRRDESTE
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)