AT1G52630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G35570.1); Has 803 Blast hits to 801 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 803; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19606470..19608526 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49549.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||
| Length | 439 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIGSPVKPLF VFVLTFSLLL VVILLSPSPH ILQIPFPSGS SVGSSDIWSV KRIMEWRPCK WWLQGHLTPL PAKTNGYIRV DCYGGLNQMR RDLCDGVGIA 101: RLLNATLVLP KFEVAAYWNE SSGFADVFDV DYFIQKMSGY IEVVKELPKD IASKEPFKVD CSKRKGQFDY IESVLPLLLE HHYISFTPAM SQRRDRYPEY 201: ARATLCQACY SAIHLTSSLE KKAVELFDAI PKPFLSLHLR FEPDMVAYSQ CEYPNLSPSS IAAIEAARAD RKPWTGELAQ TWRKRGKCPL TPNETVLMLQ 301: SLNIPTSTNI YLAAGDGLME MEGFTSVYTN VFTKSVLLNQ EDFTRMHGNT KAALDYHVSI NSDAYVATYF GNMDKIVAAM RTYKQMHNTL FLSRKAFAEL 401: TSQGLEGAEL KKALWEVHKS DFAIGRGFAL PDCFCEFEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)