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AT4G28320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.747
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT2G20680.1); Has 750 Blast hits to 740 proteins in 186 species: Archae - 6; Bacteria - 225; Metazoa - 0; Fungi - 183; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28320-MONOMERBRENDA:3.2.1.78CAZy:GH5EC:3.2.1.78
eggNOG:COG3934eggNOG:ENOG410IKPIEMBL:AK228732EMBL:AL161572
EMBL:BT026124EMBL:CP002687EnsemblPlants:AT4G28320EnsemblPlants:AT4G28320.1
entrez:828947Gene3D:3.20.20.80GeneID:828947Genevisible:Q9M0H6
GO:GO:0005576GO:GO:0009845GO:GO:0016985GO:GO:0046355
Gramene:AT4G28320.1hmmpanther:PTHR31451hmmpanther:PTHR31451:SF1HOGENOM:HOG000169952
InParanoid:Q9M0H6InterPro:IPR001547InterPro:IPR013781InterPro:IPR017853
iPTMnet:Q9M0H6KEGG:ath:AT4G28320KO:K19355OMA:FMEGMET
PaxDb:Q9M0H6Pfam:PF00150Pfam:Q9M0H6PhylomeDB:Q9M0H6
PIR:T09048PRIDE:Q9M0H6PRO:PR:Q9M0H6ProteinModelPortal:Q9M0H6
Proteomes:UP000006548RefSeq:NP_194561.1SMR:Q9M0H6STRING:3702.AT4G28320.1
SUPFAM:SSF51445TAIR:AT4G28320tair10-symbols:AtMAN5tair10-symbols:MAN5
TMHMM:TMhelixUniGene:At.48910UniGene:At.71248UniProt:Q9M0H6
Coordinates (TAIR10) chr4:-:14018293..14019972
Molecular Weight (calculated) 49901.50 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.43
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPTRNRPML RILGFFICAA FIYLSFRDLW LNHKGKAKLG FVKRNGTQFV VDDKPLYVNG WNSYWFMDHA VDEHSRNLVG EMLEAGAKMG LTVCRTWAFN
101: DGGYNALQIS PGRFDERVFQ ALDHVIAEAR KHDVRLLLSL VNNLQAYGGK TQYVKWAWQE GVGLSSSNDS FFFDPSIRNY FKNYLKVLLT RKNSVTGIEY
201: RNDPTIFAWE LINEPRCTTD VSGKTLQDWI DEMTGFIKSI DDKHLLTVGL EGFYGPNSPK GLTVNPEQWA SQLGTDFVQN SNSSNIDFAS VHIYPDHWFH
301: NQTFEEKLKF VVKWMQSHIE DGLKELKKPV LFTEFGLSNQ NKDYEPSQRD KFYRIIFDVV YKSAKRKKSG AGTLVWQLFM EGMETFNDDF GIVPHEQDSI
401: YKLMIEQSCR LGKVTGRLKE QKLKELCSHR H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)