AT3G27320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.461 plasma membrane 0.454 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 16 (TAIR:AT5G14310.1); Has 7383 Blast hits to 7368 proteins in 1325 species: Archae - 107; Bacteria - 4231; Metazoa - 304; Fungi - 631; Plants - 1324; Viruses - 3; Other Eukaryotes - 783 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10090307..10092391 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50534.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSVGVKLYS VFFKFLLKHR LQNRIQSSGD ESSSDPFGVT TRPEESVAAP NPLFTDGVAT KDIHIDPLTS LSVRIFLPES ALTPLEPSTS ACVYSGKART 101: LNNIAGSDLL SRRNSLGSSN SLLSHKVESR RNSYGYTTGS SSPEAGSSDV YRGYAPSSSG GNSRKLPVML QFHGGGWVSG SNDSVANDFF CRRMAKHCDI 201: IVLAVGYRLA PENRYPAACE DGFKVLKWLG KQANLAECNK SMGNSRRPGG EVKKSEVNKH IVDAFGASLV EPWLANHADP SRCVLLGVSC GANIADYVAR 301: KAIEVGQNLD PVKVVAQVLM YPFFIGSVPT QSEIKQANSY FYDKPMCILA WKLFLPEEEF SLDHQAANPL VPGRSPPLKF MPPTLTIVAE HDWMRDRAIA 401: YSEELRKVNV DAPVLEYKDA VHEFATLDML LRTPQAQACA EDIAIWAKKY ISLRGHEFSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)