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AT5G57700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.586
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BNR/Asp-box repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BNR/Asp-box repeat family protein; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040), BNR repeat (InterPro:IPR002860); Has 764 Blast hits to 756 proteins in 302 species: Archae - 6; Bacteria - 617; Metazoa - 0; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
DNASU:835877eggNOG:COG4692eggNOG:ENOG410INAZEMBL:BT029472
EMBL:CP002688EnsemblPlants:AT5G57700EnsemblPlants:AT5G57700.1entrez:835877
ExpressionAtlas:A1A6F3Gene3D:2.120.10.10GeneID:835877Gramene:AT5G57700.1
hmmpanther:PTHR33307hmmpanther:PTHR33307:SF2InterPro:IPR011040Pfam:PF13088
PhylomeDB:A1A6F3Proteomes:UP000006548RefSeq:NP_851204.1STRING:3702.AT5G57700.3
SUPFAM:SSF50939TAIR:AT5G57700UniGene:At.42974UniProt:A1A6F3
Coordinates (TAIR10) chr5:+:23375275..23376943
Molecular Weight (calculated) 39042.40 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.30
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSSQMSETE FKVLLETFTF PADSAPFKSC HASTIVEVVK DHFLAAYFGG TREGAPDVKI WLQHFKDGQW DSPVIVDEEP GVPMYNPVLF KLPSHELLLF
101: YKIGQEVQKW SGCMKRSYDK GITWTEREQL PPGILGPIKN KPILLEDGTL LCGSSVESWN SWGAWMEVTS DAGRTWRKKG PIYIQGKSLS VIQPVPYQTA
201: AGNLRILLRS FTGIDRICIS ESLDGGENWS FAVPTVLPNP NSGIDGVKLK DGRLVLAYNT DSRGVLKLGV SLDDGDSWTD ILTLEESPGM EYSYPAVIQA
301: GDGNVHVTYT YNRTQIKHVV LKTATDIDSK PYRHGEAGGG HVNLDLYEPN IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)