AT1G08660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : MALE GAMETOPHYTE DEFECTIVE 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MALE GAMETOPHYTE DEFECTIVE 2 (MGP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1); Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 155; Viruses - 13; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:2757116..2759677 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54219.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSHQAGRKL PLLQLLGCVA VFSVFVFTIQ SSFFADNNRK LDLQPEDIQI LSDFQSSVQQ CVANRGLGLS AHIIDHCNLI LKFPEGTNST WYNAQFKVFE 101: ALEFKYNVCE AVLLWEQYRN MTTVLTREYL DVRPDGWLDY AAMRIAQLGA DKCYNRTLCE EHLNVILPAK PPFHPRQFHK CAVVGNSGDL LKTEFGEEID 201: SHDAVFRDNE APVNEKYAKY VGVKRDFRLV VRGAARNMIK ILNGSDNEVL IIKSVTHRDF NEMIKRIPNP VYLFQGIVLR RGAKGTGMKS IELALSMCDI 301: VDIYGFTVDP GYTEWTRYFS TPRKGHNPLQ GRAYYQLLEC LGVIRIHSPM RSERKEDWSS VPSREMISRA HTAALRLQRS QQPTSSKRDG SGQFGNCKVW 401: GDADPTKGPV SGSPDMSETR KKSNYKKWEV MPFRSLRKEA RDHYIQMKGV SQYKMDGNKL DDLVCVRHPL KLDT |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)