AT1G54180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BREVIS RADIX-like 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BREVIS RADIX-like 3 (BRX-LIKE3); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (TAIR:AT3G14000.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20227697..20229728 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41992.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||||||
| Length | 370 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTCIACTKQ LNTNNGGSTR EEDEEHGVIG TPRTKQAIKS LTSQLKDMAV KASGAYKNCK PCSGTTNRNQ NRNYADSDAA SDSGRFHYSY QRAGTATSTP 101: KIWGNEMESR LKGISSEEGT PTSMSGRTES IVFMEDDEVK EWVAQVEPGV LITFVSLPQG GNDLKRIRFR STRFPYYRDQ LLLWCRQGWV FWPQNCREMF 201: NKWQAQKWWV ENFEKVMELY NVQFNQQSVP LQTPPVSEDG GSQIQSVKDS PVTPPLERER PHRNIPGSSG FASTPKLSSI SGTKTETSSI DGSARSSSVD 301: RSEEVSVSNA SDMESEWVEQ DEPGIYITIR ALPDGNRELR RVRFSRDKFG ETHARLWWEQ NRARIQQQYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)