suba logo
AT4G27760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Encodes an oxidoreductase required for vegetative shoot apex development. Mutants display disruptions in leaf positioning and meristem maintenance.
Computational
Description (TAIR10)
FOREVER YOUNG (FEY); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: multicellular organismal development, meristem maintenance; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G53090.1); Has 74609 Blast hits to 74569 proteins in 3131 species: Archae - 650; Bacteria - 51148; Metazoa - 4951; Fungi - 3783; Plants - 2113; Viruses - 0; Other Eukaryotes - 11964 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1028eggNOG:KOG1208EMBL:CP002687EnsemblPlants:AT4G27760
EnsemblPlants:AT4G27760.1entrez:828890Gene3D:3.40.50.720GeneID:828890
GO:GO:0005783GO:GO:0010073GO:GO:0016491Gramene:AT4G27760.1
hmmpanther:PTHR24320hmmpanther:PTHR24320:SF73InParanoid:F4JJR8InterPro:IPR002347
InterPro:IPR016040KEGG:ath:AT4G27760OMA:AQIMFSSPaxDb:F4JJR8
Pfam:PF00106PRIDE:F4JJR8PRINTS:PR00080PRINTS:PR00081
ProteinModelPortal:F4JJR8Proteomes:UP000006548RefSeq:NP_194506.4SMR:F4JJR8
STRING:3702.AT4G27760.1SUPFAM:SSF51735TAIR:AT4G27760tair10-symbols:FEY
tair10-symbols:FEY3UniGene:At.20676UniProt:F4JJR8
Coordinates (TAIR10) chr4:+:13844151..13846563
Molecular Weight (calculated) 41483.80 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.08
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDETTSSPS PAPAKKKQNL GWMEWMRGWS SVFGEILFQR ITASHLENPL PLPSVNDLTC VVTGSTSGIG RETARQLAEA GAHVVMAVRN TKAAQELILQ
101: WQNEWSGKGL PLNIEAMEID LLSLDSVARF AEAFNARLGP LHVLINNAGM FAMGEAQKFS EEGYEQHMQV NHLAPALLSV LLLPSLIRGS PSRIINVNSV
201: MHSVGFVDPD DMNVVSGRRK YSSLIGYSSS KLAQIMFSSI LFKKLPLETG VSVVCLSPGV VLTNVARDLS RILQALYAVI PYFIFSPQEG CRSSLFSATD
301: PQIPEYWETL KNDDWPVCPF ISQDCRPANP SEEAHNTETA QRVWKKTLEL VGLPLDAVEK LIEGENIQCR YGAQHE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)