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AT1G60860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.659
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF-GAP domain 2
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.
Computational
Description (TAIR10)
ARF-GAP domain 2 (AGD2); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 4 (TAIR:AT1G10870.1); Has 22643 Blast hits to 15173 proteins in 641 species: Archae - 75; Bacteria - 1664; Metazoa - 11505; Fungi - 2316; Plants - 1355; Viruses - 192; Other Eukaryotes - 5536 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5347eggNOG:KOG0521EMBL:AC018908EMBL:AC079675
EMBL:AK118751EMBL:CP002684EnsemblPlants:AT1G60860EnsemblPlants:AT1G60860.1
entrez:842378Gene3D:1.20.1270.60Gene3D:1.25.40.20Gene3D:2.30.29.30
GeneID:842378Genevisible:Q9C6C3GO:GO:0005096GO:GO:0005737
GO:GO:0046872Gramene:AT1G60860.1hmmpanther:PTHR23180hmmpanther:PTHR23180:SF244
HOGENOM:HOG000006421InParanoid:Q9C6C3InterPro:IPR001164InterPro:IPR001849
InterPro:IPR002110InterPro:IPR004148InterPro:IPR011993InterPro:IPR020683
InterPro:IPR027267KEGG:ath:AT1G60860KO:K12489OMA:CIASGNN
PaxDb:Q9C6C3Pfam:PF00169Pfam:PF01412Pfam:PF12796
Pfam:PF16746Pfam:Q9C6C3Pfscan:PS50003Pfscan:PS50088
Pfscan:PS50115Pfscan:PS50297PhylomeDB:Q9C6C3PIR:A96634
PRIDE:Q9C6C3PRINTS:PR00405PRO:PR:Q9C6C3PROSITE:PS50003
PROSITE:PS50088PROSITE:PS50115PROSITE:PS50297ProteinModelPortal:Q9C6C3
Proteomes:UP000006548RefSeq:NP_176283.1SMART:SM00105SMART:SM00233
SMART:SM00248SMART:SM00721SMR:Q9C6C3STRING:3702.AT1G60860.1
SUPFAM:SSF103657SUPFAM:SSF48403SUPFAM:SSF50729SUPFAM:SSF57863
TAIR:AT1G60860tair10-symbols:AGD2UniGene:At.36578UniProt:Q9C6C3
Coordinates (TAIR10) chr1:-:22401244..22407639
Molecular Weight (calculated) 87807.60 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.53
Length 776 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)